Recent publications (since 2010)

Alain Arnéodo

Book chapters:
  • Audit, B., Zaghloul, L., Baker, A., Chen, C.-L., d’Aubenton-Carafa, Y., Thermes, C., Arnéodo, A., « Megabase replication domains along the human genome: relation to chromatin structure and genome organisation », in Epigenetics: Developpment and Disease, Tapas K. Kundu, eds., Bubcellular Biochemistry Vol. 61, Netherlands, Springer, 2013.
Peer-reviewed journal articles:
  • Julienne, H., Audit, B., Arnéodo, A., « Embryonic stem cell specific “Master” replication origins at the heart of the loss of pluripotency  », PLoS Computational Biology, 11:2 (February 2015), e1003969, 38 p.
  • Zaghloul, L., Drillon, G., Boulos, R., Argoul, F., Thermes, C., Arnéodo, A., Audit, B., « Large replication skew domains delimit GC-poor gene deserts in human  », Computational Biology and Chemistry, 53A (December 2014), 153–165.
  • Hyrien, O., Rappailles, A., Guilbaud, G., Baker, A., Chen, C.-L., Goldar, A., Petryk, N., Kahli, M., Ma, E., d’Aubenton-Carafa, Y., Audit, B., Thermes, C., Arnéodo, A., « From simple bacterial and archaeal replicons to replication N/U- Domains », Journal of Molecular Biology, 425:23 (November 2013), 4673–4689.
  • Berguiga, L., Boyer-Provera, E., Martinez-Torres, C., Elezgaray, J., Arnéodo, A., Argoul, F., « Guided wave microscopy: mastering the inverse problem  », Optics Letters, 38:21 (November 2013), 4269–4272.
  • Julienne, H., Zoufir, A., Audit, B., Arnéodo, A., « Human genome replication proceeds through four chromatin states », PLoS Computational Biology, 9:10 (October 2013), e1003233.
  • Boulos, R., Arnéodo, A., Jensen, P., Audit, B., « Reveling long-range interconnected hubs in human chromatin interaction data using graph theory », Physical Review Letters, 111 (September 2013), 118102, 5 p.
  • Riche, S., Zouak, M., Argoul, F., Arnéodo, A., Pecreaux, J., Delattre, M., « Evolutionary comparisons reveal a positional switch for spindle pole oscillations in Caenorhabditis embryos », The Journal of Cell Biology, 201:5 (May 2013), 653–662.
  • Boyer-Provera, E., Oriol, L., Dumontet, C., Plesa, A., Berguiga, L., Elezgaray, J., Arnéodo, A., Argoul, F., Rossi, A., « Wavelet-based decomposition of high resolution surface plasmon microscopy V(Z) curves at visible and near in frared wavelengths », Optics Express, 21:6 (March 2013), 7456–7477.
  • Audit, B., Baker, A., Chen, C.-L., Rappailles, A., Guilbaud, G., Hanna, J., Goldar, A., d’Aubenton-Carafa, Y., Hyrien, O., Thermes, C., Arnéodo, A., « Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm », Nature Protocols, 8 (January 2013), 98–110.
  • Gerasimova, E., Audit, B., Roux, S., Khalil, A., Argoul, F., Naimark, O., Arnéodo, A., « Multifractal analysis of dynamic infrared imaging of breast cancer », EPL (Europhysics Letters), 104:6 (2013), 68001, 6 p.
  • Baker, A., Julienne, H., Chen, C.-L., Audit, B., d’Aubenton-Carafa, Y., Thermes, C., Arnéodo, A., « Linking the DNA strand asymmetry to the spatio-temporal replication program. II. Accounting for neigbor-dependent substitution rates », The European Phisical Journal E, 35:123 (November 2012).
  • Baker, A., Julienne, H., Chen, C.-L., Audit, B., d’Aubenton-Carafa, Y., Thermes, C., Arnéodo, A., « Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution », The European Phisical Journal E, 35:92 (September 2012).
  • Moindrot, B., Audit, B., Klous, P., Baker, A., Thermes, C., de Laat, W., Bouvet, P., Mongelard, F., Arnéodo, A., « 3D chromatin conformation correlates with replication timing and is conserved in resting cells », Nucleic Acids Research, 40:19 (August 2012), 9470–9481.
  • Baker, A., Audit, B., Yang, S. C.-H., Bechhoefer, J., Arnéodo, A., « Inferring where and when replication initiates from geome-wide replication timing data  », Physical Review Letters, 108:26 (June 2012), 268101, 5 p.
  • Baker, A., Audit, B., Chen, C.-L., Moindrot, B., Leleu, A., Guilbaud, G., Rappailles, A., Vaillant, C., Goldar, A., Mongelard, F., d’Aubenton-Carafa, Y., Hyrien, O., Thermes, C., Arnéodo, A., « Replication fork polarity gradients revealed by megabse-sized u-shaped replication timing domains in human cell lines », PLoS Computational Biology, 8:4 (April 2012), e1002443.
  • Travers, A. A., Vaillant, C., Arnéodo, A., Muskhelishvili, G., « DNA structure, nucleosome placement and chromatin remodelling: a perspective », Biochemical Society Transactions, 40:2 (April 2012), 335–340.
  • Guilbaud, G., Rappailles, A., Baker, A., Chen, C.-L., Arnéodo, A., Goldar, A., d’Aubenton-Carafa, Y., Thermes, C., Audit, B., Hyrien, O., « Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome », PLoS Computational Biology, 7:12 (December 2011), e1002322.
  • Moukhtar, J., Vaillant, C., Audit, B., Arnéodo, A., « Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains », The European Phisical Journal E, 34 (November 2011), 119.
  • Chen, C.-L., Duquenne, L., Audit, B., Guilbaud, G., Rappailles, A., Baker, A., Huvet, M., d’Aubenton-Carafa, Y., Hyrien, O., Arnéodo, A., Thermes, C., « Replication-associated mutational asymmetry in the human genome », Molecular Biology and Evolution, 28:8 (August 2011), 2327–2337.
  • Milani, P., Gholamirad, M., Traas, J., Arnéodo, A., Boudaoud, A., Argoul, F., Hamant, O., « In vivo analysis of local wall stiffness at the shoot apical meristem in arabidopsis using atomic force microscopy », The Plant Journal, 67:6 (July 2011), 1116–1123.
  • Milani, P., Marilley, M., Sanchez-Sevilla, A., Imbert, J., Vaillant, C., Argoul, F., Egly, J.-M., Rocca-Serra, J., Arnéodo, A., « Mechanics of the IL2RA gene activation revealed by modeling and atomic force microscopy », PLoS One, 6:4 (April 2011), e18811.
  • Arnéodo, A., Vaillant, C., Audit, B., Argoul, F., d’Aubenton-Carafa, Y., Thermes, C., « Multi-scale coding of genomic information: From DNA sequence to genome structure and function », Physics Reports, 498: 2-3 (February 2011), 45–188.
  • Lesbats, P., Botbol, Y., Chevereau, G., Vaillant, C., Calmels, C., Arnéodo, A., Andreola, M.-L., Lavigne, M., Parissi, V., « Functional coupling between HIV-1 integrase and the SWI/SNF chromatin remodeling complex for efficient in vitro integration into stable nucleosomes », PLoS Pathogens, 7:2 (February 2011), e1001280.
  • Chevereau, G., Arnéodo, A., Vaillant, C., « Influence of the genomic sequence on the primary structure of chromatin  », Frontiers in Life Science, 5:1-2 (2011), 29–68.
  • Grant, J., Verrill, C., Coustham, V., Arnéodo, A., Palladino, F., Monier, K., Khalil, A., « Perinuclear distribution of heterochromatin in developing C. elegans embryos », Chromosome Research, 18:8 (December 2010), 873–885.
  • Saracco, G., Arnéodo, A., Beylkin, G., « Special issue on continuous wavelet transform in memory of Jean Morlet, Part II », Applied and Computational Harmonic Analysis, 28:3 (May 2010), 249–250.
  • Chen, C.-L., Rappailles, A., Duquenne, L., Huvet, M., Guilbaud, G., Farinelli, L., Audit, B., d’Aubenton-Carafa, Y., Arnéodo, A., Hyrien, O., Thermes, C., « Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes », Genome Research, 20:4 (April 2010), 447–457.
  • Saracco, G., Arnéodo, A., Beylkin, G., « Preface: Special issue on continuous wavelet transform inmemory of Jean Morlet, Part I », Applied and Computational Harmonic Analysis, 28:2 (March 2010), 129–130.
  • Baker, A., Nicolay, S., Zaghloul, L., d’Aubenton-Carafa, Y., Thermes, C., Audit, B., Arnéodo, A., « Wavelet-based method to disentangle transcription- and replication-associated strand asymmetries in mammalian genomes », Applied and Computational Harmonic Analysis, 28:2 (March 2010), 150–170.
  • Moukhtar, J., Faivre-Moskalenko, C., Milani, P., Audit, B., Vaillant, C., Fontaine, E., Mongelard, F., Lavorel, G., St-Jean, P., Bouvet, P., Argoul, F., Arnéodo, A., « Effect of genomic long-range correlations on DNA persistence length: from theory to single molecule experiments », The Journal of Physical Chemistry B, 114:15 (March 2010), 5125–5143.
  • Vaillant, C., Palmeira, L., Chevereau, G., Audit, B., d’Aubenton-Carafa, Y., Thermes, C., Arnéodo, A., « A novel strategy of transcription regulation by intragenic nucleosome ordering », Genome Research, 20:1 (January 2010), 59–67.
Peer-reviewed conference proceedings:
  • Audit, B., Boulos, R., Baker, A., Julienne, H., Arnéodo, A., Chen, C.-L., d’Aubenton-Carafa, Y., Thermes, C., Goldar, A., Guilbaud, G., Rappailles, A., Hyrien, O., « Relating mammalian replication program to large-scale chromatin folding », in Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, New York, ACM, 2013, 799–810.
Habib Benali

Peer-reviewed journal articles:
  • Gargouri, F., Messé, A., Perlbarg, V., Valabrègue, R., McColgan, P., Yahia-Cherif, L., Fernandez-Vidal, S., Ben Hamida, A., Benali, H., Tabrizi, S., Durr, A., Lehéricy, S., « Longitudinal changes in functional connectivity of cortico-basal ganglia networks in manifests and premanifest huntington's disease », Human Brain Mapping (XXXX), accepted.
  • Operto, G., Chupin, M., Batrancourt, B., Habert, M.-O., Colliot, O., Benali, H., Poupon, C., Champseix, C., Delmaire, C., Marie, S., Rivière, D., Pélégrini-Issac, M., Perlbarg, V., Trebosson, R., Bottlaender, M., Frouin, V., Grigis, A., Papadopoulos Orfanos, D., Dary, H., Fillon, L., Azouani, C., Bouyahia, A., Fischer, C., Edward, L., Bouin, M., Thoprakarn, U., Li, J., Makkaoui, L., Poret, S., Dufouil, C., Bouteloup, V., Chételat, G., Dubois, B., Lehéricy, S., Mangin, J.-F., Cointepas, Y., « CATI: A large distributed infrastructure for the neuroimaging of cohorts », Neuroinformatics, 14:3 (July 2016), 253–264.
  • Sangari, S., Iglesias, C., El Mendili, M.-M., Benali, H., Pradat, P.-F., Marchand-Pauvert, V., « Impairment of sensory-motor integration at spinal level in amyotrophic lateral sclerosis », Clinical Neurophysiology, 127:4 (April 2016), 1968–1977.
  • Laventure, S., Fogel, S., Lungu, O., Albouy, G., Sévigny-Dupont, P., Vien, C., Sayour, C., Carrier, J., Benali, H., Doyon, J., « NREM2 and sleep spindles are instrumental to the consolidation of motor sequence memories », PLOS Biology, 14:3 (March 2016), e1002429, 27 p.
  • Dubois, B., Hampel, H., Feldman, H., Scheltens, P., Aisen, P., Andrieu, S., Bakardjian, H., Benali, H., Bertram, L., Blennow, K., Broich, K., Cavedo, E., Crutch, S., Dartigues, J.-F., Duyckaerts, C., Epelbaum, S., Frisoni, G. B., Gauthier, S., Genthon, R., Gouw, A. A., Habert, M.-O., Holtzman, D. M., Kivipelto, M., Lista, S., Molinuevo, J.-L., O’Bryant, S. E., Rabinovici, G. D., Rowe, C., Salloway, S., Schneider, L. S., Sperling, R., Teichmann, M., Carrillo, M. C., Cummings, J., Jack, C. R., « Preclinical Alzheimer's disease: Definition, natural history, and diagnostic criteria », Alzheimer's & Dementia, 12:3 (March 2016), 292–323.
  • Blanchard, S., Saillet, S., Ivanov, A., Benquet, P., Bénar, C.-G., Pélégrini-Issac, M., Benali, H., Wendling, F., « A new computational model for neuro-glio-vascular coupling: Astrocyte activation can explain cerebral blood flow nonlinear response to interictal events », PLoS One, 12:2 (February 2016), e0147292, 21 p.
  • Sockeel, S., Schwartz, D., Pélégrini-Issac, M., Benali, H., « Large-scale functional networks identified from resting-state EEG using spatial ICA », PLoS One, 11:1 (January 2016), e0146845, 18 p.
  • El Mendili, M.-M., Lenglet, T., Stojkovic, T., Behin, A., Guimarães-Costa, R., Salachas, F., Meininger, V., Bruneteau, G., Le Forestier, N., Lafôret, P., Lehéricy, S., Benali, H., Pradat, P.-F., « Cervical spinal cord atrophy profile in adult SMN1-linked SMA », PLoS One, 11:4 (2016), e0152439, 12 p.
  • Garnier, A., Vidal, A., Benali, H., « A theoretical study on the role of astrocytic activity in neuronal hyperexcitability by a novel neuron-glia mass model », The Journal of Mathematical Neuroscience, 6 (2016), 10, 30 p.
  • Huneau, C., Benali, H., Chabriat, H., « Investigating human neurovascular coupling using functional neuroimaging: A critical review of dynamic models », Frontiers in Neuroscience, 9 (December 2015), Article 467, 12 p.
  • Samson, F., Zeffiro, T. A., Doyon, J., Benali, H., Mottron, L., « Speech acquisition predicts regions of enhanced cortical response to auditory stimulation in autism spectrum individuals », Journal of Psychiatric Research, 68 (September 2015), 285–292.
  • Caroppo, P., Habert, M.-O., Durrleman, S., Funkiewiez, A., Perlbarg, V., Hahn, V., Bertin, H., Gaubert, M., Routier, A., Hannequin, D., Deramecourt, V., Pasquier, F., Rivaud-Perchoux, S., Vercelletto, M., Edouart, G., Valabrègue, R., Lejeune, P., Didic, M., Corvol, J.-C., Benali, H., Lehéricy, S., Dubois, B., Colliot, O., Brice, A., Le Ber, I., « Lateral temporal lobe: An early imaging marker of the presymptomatic GRN disease? », Journal of Alzheimer's Disease, 47:3 (August 2015), 751–759.
  • Laouchedi, M., Galanaud, D., Delmaire, C., Fernandez-Vidal, S., Messé, A., Mesmoudi, S., Oulebsir Boumghar, F., Pélégrini-Issac, M., Puybasset, L., Benali, H., Perlbarg, V., « Deafferentation in thalamic and pontine areas in severe traumatic brain injury », Journal of Neuradiology, 42:4 (July 2015), 202–211.
  • Vahdat, S., Lungu, O., Cohen-Adad, J., Marchand-Pauvert, V., Benali, H., Doyon, J., « Simultaneous brain-cervical cord fMRI Reveals intrinsic spinal cord plasticity during motor sequence learning », PLOS Biology, 13:6 (June 2015), e1002186, 25 p.
  • Barbeau, E. B., Lewis, J. A., Doyon, J., Benali, H., Mottron, L., Zeffiro, T. A., « A greater involvement of posterior brain areas in interhemispheric transfer in autism: fMRI, DWI and behavioral evidences », NeuroImage: Clinical, 8 (April 2015), 267–280.
  • El Mendili, M.-M., Chen, R., Tiret, B., Villard, N., Trunet, S., Pélégrini-Issac, M., Lehéricy, S., Pradat, P.-F., Benali, H., « Fast and accurate semi-automated segmentation method of spinal cord MR images at 3T applied to the construction of a cervical spinal cord template », PLoS One, 10;3 (March 2015), e0122224, 21 p.
  • Albouy, G., Fogel, S., King, B. R., Laventure, S., Benali, H., Kami, A., Carrier, J., Robertson, E. M., Doyon, J., « Maintaining vs. enhancing motor sequence memories: respective roles of striatal and hippocampal systems », NeuroImage, 108 (March 2015), 423–434.
  • El Mendili, M.-M., Chen, R., Tiret, B., Pélégrini-Issac, M., Cohen-Adad, J., Lehéricy, S., Pradat, P.-F., Benali, H., « Validation of semiautomated spinal cord segmentation method », Journal of Magnetic Resonance Imaging, 41:2 (February 2015).
  • Garnier, A., Vidal, A., Huneau, C., Benali, H., « A neural mass model with direct and indirect excitatory feedback loops: identification of bifurcations and temporal dynamics », Neural Computation, 27:2 (February 2015), 329–364.
  • Messé, A., Benali, H., Marrelec, G., « Relating structural and functional connectivity in MRI: a simple model for a complex brain », IEEE Transactions on Medical Imaging, 34:1 (January 2015), 27–37.
  • Iglesias, C., Sangari, S., El Mendili, M.-M., Benali, H., Marchand-Pauvert, V., Pradat, P.-F., « Electrophysiological and spinal imaging evidences for sensory dysfunction in amyotrophic lateral sclerosis », BMJ Open, 5 (2015), e007659, 10 p.
  • Hinson, H. E., Puybasset, L., Weiss, N., Perlbarg, V., Benali, H., Galanaud, D., Lasarev, M., Stevens, R. D., « Neuroanatomical basis of paroxysmal sympathetic hyperactivity: A diffusion tensor imaging analysis », Brain Injury, 29:4 (2015), 455–461.
  • Fonov, V. S., Le Troter, A., Taso, M., De Leener, B., Lévêque, G., Benhamou, M., Sdika, M., Benali, H., Pradat, P.-F., Collins, D. L., Callot, V., Cohen-Adad, J., « Framework for integrated MRI average of the spinal cord white and gray matter: The MNI–Poly–AMU template », NeuroImage, 102 (November 2014), 817–827.
  • Toussaint, P.-J., Maiz, S., Coynel, D., Doyon, J., Messé, A., Cruz de Souza, L., Sarazin, M., Perlbarg, V., Habert, M.-O., Benali, H., « Characteristics of the default mode functional connectivity in normal ageing and Alzheimer's disease using resting state fMRI with a combined approach of entropy-based and graph theoretical measurements », NeuroImage, 101 (November 2014), 778–786.
  • Debas, K., Carrier, J., Barakat, M., Marrelec, G., Bellec, P., Hadj Tahar, A., Kami, A., Ungerleider, L. G., Benali, H., Doyon, J., « Off-line consolidation of motor sequence learning results in greater integration within a cortico-striatal functional network », NeuroImage, 99 (October 2014), 50–58.
  • Marsolais, Y., Perlbarg, V., Benali, H., Joanette, Y., « Age-related changes in functional network connectivity associated with high levels of verbal fluency performance », Cortex, 58 (September 2014), 123–138.
  • Louapre, C., Perlbarg, V., García-Lorenzo, D., Urbanski, M., Benali, H., Assouad, R., Galanaud, D., Freeman, L., Bodini, B., Papeix, C., Tourbah, A., Lubetski, C., Lehéricy, S., Stankoff, B., « Brain networks disconnection in early multiple sclerosis cognitive deficits: an anatomofunctional study », Human Brain Mapping, 35 (September 2014), 4706–4717.
  • Fogel, S., Albouy, G., Vien, C., Popovicci, R., King, B. R., Hoge, R. D., Jbabdi, S., Karni, A., Maquet, P., Carrier, J., Doyon, J., Benali, H., « fMRI and sleep correlates of the age-related impairement in motor memory consolidation », Human Brain Mapping, 35:8 (August 2014), 3625–3645.
  • El Mendili, M.-M., Cohen-Adad, J., Pélégrini-Issac, M., Rossignol, S., Morizot-Koutlidis, R., Marchand-Pauvert, V., Iglesias, C., Sangari, S., Katz, R., Lehéricy, S., Benali, H., Pradat, P.-F., « Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis », PLoS One, 9:4 (April 2014), e95516, 7 p.
  • Malherbe, C., Messé, A., Bardinet, É., Pélégrini-Issac, M., Perlbarg, V., Marrelec, G., Worbe, Y., Yelnick, J., Lehéricy, S., Benali, H., « Combining spatial independent component analysis with regression to identify the subcortical components of resting-state FMRI functional networks », Brain Connectivity, 4:3 (April 2014), 181–192.
  • Messé, A., Rudrauf, D., Benali, H., Marrelec, G., « Relating structure and function in the human brain: relative contributions of anatomy, stationary dynamics, and non-stationarities », PLoS Computational Biology, 10:3 (March 2014), e1003530, 9 p.
  • van der Eerden A. W., Khalilzadeh, O., Perlbarg, V., Dinkel, J., Sanchez, P., Vos, P. E., Luyt, C.-É., Stevens, R. D., Menjot de Champfleur, N., Delmaire, C., Tollard, E., Gupta, R., Dormont, D., Laureys, S., Benali, H., Vanhaudenhuyse, A., Galanaud, D., Puybasset, L., « White matter changes in comatoes survivors of anoxic ischemic encephalopathy and traumatic brain injury: Comparative diffusion-tensor imagining study », Radiology, 270:2 (February 2014), 506–516.
  • Poulin-Lord, M.-P., Barbeau, E. B., Soulièrers, I., Monchi, O., Doyon, J., Benali, H., Mottron, L., « Increased topographical variability of task-related activation in perceptive and motor associative regions in adult autistics », NeuroImage: Clinical, 4 (2014), 444–453.
  • Barakat, M., Carrier, J., Debas, K., Lungu, O., Fogel, S., Vandewalle, G., Hoge, R. D., Bellec, P., Karni, A., Ungerleider, L. G., Benali, H., Doyon, J., « Sleep spindles predict neural and behavioral changes in motor sequence consolidation », Human Brain Mapping, 34:11 (November 2013), 2918–2928.
  • Rosso, C., Valabrègue, R., Attal, Y., Vargas, P., Gaudron, M., Baronnet, F., Bertasi, E., Humbert, F., Peskine, A., Perlbarg, V., Benali, H., Lehéricy, S., Samson, Y., « Contribution of corticospinal tract and functional connectivity in hand motor impairement after stoke », PLoS One, 8:9 (September 2013), e73164, 11 p.
  • Garcia-Lorenzo, D., Longo-Dos Santos, C., Ewenczyk, C., Leu-Semenescu, S., Gallea, C., Quattrocchi, G., Pita Lobo, P., Poupon, C., Benali, H., Arnulf, I., Vidailhet, M., Lehéricy, S., « The coeruleus/subcoeruleus complex in rapid eye movement sleep behaviour disorders in Parkinson’s disease », Brain, 136:7 (July 2013), 2120–2129.
  • Mesmoudi, S., Perlbarg, V., Rudrauf, D., Messé, A., Pinsard, B., Hasboun, D., Cioli, C., Marrelec, G., Toro, R., Benali, H., Burnod, Y., « Resting state networks’ corticotopy: The dual intertwined rings architecture », PLoS One, 8:7 (July 2013), e67444, 14 p.
  • Messé, A., Caplain, S., Pélégrini-Issac, M., Blancho, S., Lévy, R., Aghakhani, N., Montreuil, M., Benali, H., Lehéricy, S., « Specific an evolving resting-state network alterations in post-concussion syndrome following mild traumatic brain injury », PLoS One, 8:6 (June 2013), e65470, 10 p.
  • Moutet, F., Delon-Martin, C., Martin, O., Sirigu, A., Delaquaize, F., Benali, H., Masquelet, A.-C., « IRM fonctionnelle. Quels apports en chirurgie de la main ? », Chirurgie de la Main, 32:3 (June 2013), 121–128.
  • Dehaes, M., Kazemi, K., Pélégrini-Issac, M., Grebe, R., Benali, H., Wallois, F., « Quantitative effect of the neonatal fontanel on synthetic near infrared spectroscopy measurements », Human Brain Mapping, 34:4 (April 2013), 878–889.
  • Sharman, M. A., Valabrègue, R., Perlbarg, V., Marrakchi-Kacem, L., Vidailhet, M., Benali, H., Brice, A., Lehéricy, S., « Parkinson’s disease patients show reduced cortical-subcortical sensorimotor connectivity », Movement Disorders, 28:4 (April 2013), 447–454.
  • Cuingnet, R., Glaunès, J. A., Chupin, M., Benali, H., Colliot, O., « Spatial and anatomical regularization of SVM: A general framework for neuroimaging data », IEEE Transactions on Pattern Analysis and Machine Intelligence, 35:3 (March 2013), 682–696.
  • Taylor, V. A., Daneault, V., Grant, J., Scavone, G., Breton, E., Roffe-Vidal, S., Courtemanche, J., Lavarenne, A., Marrelec, G., Benali, H., Beauregard, M., « Impact of meditation training on the default mode network during a restful state », Social Cognitive and Affective Neuroscience, 8:1 (January 2013), 4–14.
  • Cohen-Adad, J., El Mendili, M.-M., Morizot-Koutlidis, R., Lehéricy, S., Meininger, V., Blancho, S., Rossignol, S., Benali, H., Pradat, P.-F., « Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration », Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, 14:1 (January 2013), 30–38.
  • Marcotte, K., Perlbarg, V., Marrelec, G., Benali, H., Ansaldo, A. I., « Default-mode network fuctional connectivity in aphasia: therapy-induced neuroplasticity  », Brain and Language, 124:1 (January 2013), 45–55.
  • Ghazi Saidi, L., Perlbarg, V., Marrelec, G., Pélégrini-Issac, M., Benali, H., Ansaldo, A. I., « Functional connectivity changes in second language vocabulary learning », Brain and Language, 124:1 (January 2013), 56–65.
  • Desjardins, M., Pouliot, P., Perlbarg, V., Desjardins-Crépeau, L., Gauthier, C., Leclerc, P.-O., Hoge, R. D., Bherer, L., Benali, H., Lesage, F., « Association of cardiovascular fitness with cognition, cerebral blood flow and oxygenation in aging  », NeuroImage (2013), submitted.
  • Luyt, C.-E., Galanaud, D., Perlbarg, V., Vanhaudenhuyse, A., Stevens, R., Gupta, R., Besancenot, H., Krainik, A., Audibet, G., Combes, A., Chastre, J., Benali, H., Laureys, S., Puybasset, L., « Diffusion tensor imaging to predict long-term outcome after cardiac arrest: A bicentric pilot study », Anesthesiology, 117:6 (December 2012), 1311–1321.
  • Galanaud, D., Perlbarg, V., Gupta, R., Stevens, R., Sanchez, P., Tollard, E., de Champfleur, N. M., Dinkel, J., Faivre, S., Soto Ares, G., Veber, B., Cottenceau, V., Masson, F., Tourdias, T., André, E., Audibert, G., Schmitt, E., Ibarrola, D., Dailler, F., Vanhaudenhuyse, A., Tshibanda, L., Payen, J.-F., Le Bas, J.-F., Krainik, A., Bruder, N., Girard, N., Laureys, S., Benali, H., Puybasset, L., « Assement of white matter injury and outcome in severe brain traume: a prospective multicenter cohort », Anesthesiology, 117:6 (December 2012), 1300–1310.
  • Toussaint, P.-J., Perlbarg, V., Bellec, P., Desarnaud, S., Lacomblez, L., Doyon, J., Habert, M.-O., Benali, H., « Resting state FDG-PET functional connectivity as an early biomarker of Alzheimer’s disease using conjoint univariate and independent component anayses », NeuroImage, 63:2 (November 2012), 936–946.
  • Xie, G., Piché, M., Khoshnejad, M., Perlbarg, V., Chen, J. I., Hoge, R. D., Benali, H., Rossignol, S., Rainville, P., Cohen-Adad, J., « Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord », NeuroImage, 63:1 (October 2012), 245–252.
  • Messé, A., Marrelec, G., Bellec, P., Perlbarg, V., Doyon, J., Pélégrini-Issac, M., Benali, H., « Comparing structural and functional graph theory features in the human brain using multimodal MRI », IRBM, 33:4 (September 2012), 244–253.
  • Worbe, Y., Malherbe, C., Hartmann, A., Pélégrini-Issac, M., Messé, A., Vidailhet, M., Lehéricy, S., Benali, H., « Functional immaturity of cortico-basal ganglia networks in Gilles de la Tourette syndrome », Brain, 135:6 (June 2012), 1937–1946.
  • Messé, A., Caplain, S., Pélégrini-Issac, M., Blancho, S., Montreuil, M., Lévy, R., Lehéricy, S., Benali, H., « Structural integrity and postconcussion syndrome in mild traumatic brain injury patients », Brain Imaging and Behavior, 6:2 (June 2012), 283–292.
  • Scherer, L. C., Fonseca, R. P., Amiri, M., Adrover-Roig, D., Marcotte, K., Giroux, F., Senhadji, M. N., Benali, H., Lesage, F., Ansaldo, A. I., « Syntactic processing in bilinguals: An fNIRS study », Brain and Language, 121:2 (May 2012), 144–151.
  • Scherer, L. C., Fonseca, R. P., Giroux, F., Senhadji, M. N., Marcotte, K., Tomitch, L. M. B., Benali, H., Lesage, F., Ska, B., Joanette, Y., « Neurofunctional (re)organization underlying narrative discourse processing in aging: Evidence from fNIRS », Brain and Language, 121:2 (May 2012), 174–784.
  • Voges, N., Blanchard, S., Wendling, F., David, O., Benali, H., Papadopoulo, T., Clerc, M., Bénar, C., « Modeling of the neurovascular coupling in epileptic discharges », Brain Topography, 25:2 (April 2012), 136–156.
  • Boly, M., Perlbarg, V., Marrelec, G., Schabus, M., Laureys, S., Doyon, J., Pélégrini-Issac, M., Maquet, P., Benali, H., « Hierarchical clustering of brain activity during human nonrapid eye movement sleep », Proceedings of the National Academy of Sciences of the United States of America, 109:15 (April 2012), 5856–5861.
  • Cuingnet, R., Rosso, C., Chupin, M., Lehéricy, S., Dormont, D., Benali, H., Samson, Y., Colliot, O., « Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome », Medical Image Analysis, 15:5 (October 2011), 729–737.
  • Cohen-Adad, J., Leblond, H., Delivet-Mongrain, H., Martinez, M., Benali, H., Rossignol, S., « Wallerian degeneration after spinal cord lesions in cats detected with diffusion tensor imaging », NeuroImage, 57:3 (August 2011), 1068–1076.
  • Li, X., Coyle, D., Maguire, L., McGinnity, T. M., Benali, H., « A model selection method for nonlinear system identification based FMRI effective connectivity analysis  », IEEE Transactions on Medical Imaging, 30:7 (July 2011), 1365–1380.
  • Schrouff, J., Perlbarg, V., Boly, M., Marrelec, G., Boveroux, P., Vanhaudenhuyse, A., Bruno, M.-A., Laureys, S., Phillips, C., Pélégrini-Issac, M., Maquet, P., Benali, H., « Brain functional integration decreases during propofol-induced loss of consciousness », NeuroImage, 57:1 (July 2011), 198–205.
  • Sharman, M. A., Cohen-Adad, J., Descoteaux, M., Messé, A., Benali, H., Lehéricy, S., « Impact of outliers on diffusion tensor and q-ball imaging: Clinical implications and correction strategies », Journal of Magnetic Resonance Imaging, 33:6 (June 2011), 1491–1502.
  • Messé, A., Caplain, S., Paradot, G., Garrigue, D., Mineo, J.-F., Soto Ares, G., Ducreux, D., Vignaud, F., Rozec, G., Desal, H., Pélégrini-Issac, M., Montreuil, M., Benali, H., Lehéricy, S., « Diffusion tensor imaging and white matter lesions at the subacute stage in mild traumatic brain injury with persistent neurobehavioral impairment  », Human Brain Mapping, 32:6 (June 2011), 999–1011.
  • Cuingnet, R., Gérardin, E., Tessieras, J., Auzias, G., Lehéricy, S., Habert, M.-O., Benali, H., Colliot, O., Chupin, M., « Automatic classification of patients with Alzheimer’s disease from structural MRI: a comparison of ten methods using the ADN database », NeuroImage, 56:2 (May 2011), 766–781.
  • Doyon, J., Orban, P., Barakat, M., Debas, K., Lungu, O., Albouy, G., Fogel, S., Proulx, S., Laventure, S., Deslauriers, J., Duchesne, C., Carrier, J., Benali, H., « Plasticité fonctionnelle du cerveau et apprentissage moteur », Médecine/Sciences 24:4 (April 2011), 413–420.
  • Cohen-Adad, J., El Mendili, M.-M., Lehéricy, S., Pradat, P.-F., Blancho, S., Rossignol, S., Benali, H., « Demyelination and degeneration in the injured human spinal cord detected with diffusion and magnetization transfer MRI », NeuroImage, 55:3 (April 2011), 1024–1033.
  • Orban, P., Peigneux, P., Lungu, O., Debas, K., Barakat, M., Bellec, P., Benali, H., Maquet, P., Doyon, J., « Functional neuroanatomy associated with the expression of distinct movement kinematics in motor sequence learning », Neuroscience, 179 (April 2011), 94–103.
  • Dehaes, M., Gagnon, L., Lesage, F., Pélégrini-Issac, M., Vignaud, A., Valabrègue, R., Grebe, R., Wallois, F., Benali, H., « Quantitative investigation of the effect of the extra-cerebral vasculature in diffuse optical imaging: a simulation study », Biomedical Optics Express, 2:3 (March 2011), 680–695.
  • Blanchard, S., Papadopoulo, T., Bénar, C., Voges, N., Clerc, M., Benali, H., Warnking, J., David, O., Wendling, F., « Relationship between flow and metabolism in BOLD signals: insights from biophysical models. », Brain Topography, 24:1 (March 2011), 40–53.
  • Barakat, M., Doyon, J., Debas, K., Vandewalle, G., Morin, A., Poirier, G., Martin, N., Lafortune, M., Karni, A., Ungerleider, L. G., Benali, H., Carrier, J., « Fast and slow spindle involvement in the consolidation of new motor sequence », Behavioural Brain Research, 217:1 (February 2011), 117–121.
  • Sockeel, S., Schwartz, D., Martinerie, J., Benali, H., Garnero, L., « Extraction de réseaux fonctionnels en EEG par analyse en composantes indépendantes spatiale », IRBM, 32:1, Le cerveau dans tous ses états (February 2011), 35–41.
  • Marrelec, G., Benali, H., « Large-sample asymptotic approximations for the sampling and posterior distributions of differential entropy for multivariate normal distribution », Entropy, 13:4 (2011), 805–819.
  • Goguin, A., Lesage, F., Leblond, H., Pélégrini-Issac, M., Rossignol, S., Benali, H., « A low-cost implantable near infrared imaging system of spinal cord activity in the cat », IEEE Transactions on Biomedical Circuits and Systems, 4:5 (October 2010), 329–335.
  • Li, X., Coyle, D., Maguire, L., McGinnity, T. M., Watson, D. R., Benali, H., « A least angle regression method for fMRI activation detection in phase-encoded experimental designs  », NeuroImage, 52:4 (October 2010), 1390–1400.
  • Debas, K., Carrier, J., Orban, P., Barakat, M., Lungu, O., Vandewalle, G., Hadj Tahar, A., Bellec, P., Karni, A., Ungerleider, L. G., Benali, H., Doyon, J., « Brain plasticity related to the consolidation of motor sequences learning and motor adaptation », Proceedings of the National Academy of Sciences of the United States of America, 107:41 (October 2010), 17839–17844.
  • Bellec, P., Rosa-Neto, P., Lyttelton, O. C., Benali, H., Evans, A. C., « Multi-level bootstrap analysis of stable clusters in resting-state fMRI », NeuroImage, 51:3 (July 2010), 1126–1139.
  • Li, X., Messé, A., Marrelec, G., Pélégrini-Issac, M., Benali, H., « An enhanced voxel-based morphometry method to investigate structural changes: application to Alzheimer’s disease », Neuroradiology, 52:3 (March 2010), 203–213.
  • Li, X., Marrelec, G., Hess, R. F., Benali, H., « A nonlinear identification method to study effective connectivity in functional MRI », Medical Image Analysis, 14:1 (February 2010), 30–38.
  • Coynel, D., Marrelec, G., Perlbarg, V., Pélégrini-Issac, M., Van de Moortele, P.-F., Ugurbil, K., Benali, H., Lehéricy, S., « Dynamics of motor-related functional integration during motor sequence learning », NeuroImage, 49:1 (January 2010), 759–766.
  • Orban, P., Peigneux, P., Lungu, O., Albouy, G., Breton, E., Laberenne, F., Benali, H., Maquet, P., Doyon, J., « The multifaceted nature of the relationship between performance and brain activity in motor sequence learning », NeuroImage, 49:1 (January 2010), 694–702.
Peer-reviewed conference proceedings:
  • Tsiakaka, O., Terosiet, M., Romain, O., Histace, A., Benali, H., Pradat, P.-F., Vallette, F., Feher, M., Feruglio, S., « In vivo NIRS monitoring in pig spinal cord tissues », in 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (Milan, 2015), IEEE, 2015, 4262–4265.
  • Toussaint, P.-J., Maiz, S., Coynel, D., Messé, A., Perlbarg, V., Habert, M.-O., Benali, H., « Characterization of the default mode functional connectivity in normal aging and Alzheimer's disease: An approach combining entropy-based and graph theoretical measurements », IEEE, 2011, 853–856.
  • Cuingnet, R., Rosso, C., Lehéricy, S., Dormont, D., Benali, H., Samson, Y., Colliot, O., « Spatially regularized SVM for the detection of the brain areas associated witn stoke outcome », in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part I, Tianzi Jiang, Nassir Navab, Josien P.W. Pluim, Max A. Viergever, eds., Lecture Notes in Computer Science, Vol. 6361, Berlin, Springer, 2010, 316–323.
  • Malherbe, C., Pélégrini-Issac, M., Perlbarg, V., Lehéricy, S., Marrelec, G., Benali, H., « Identification of functional cortico-subcortical networks in resting-state FMRI: A combined nedica and GLM Analysis », in Conference proceedings IEEE International Symposium on Biomedical Imagining, International Symposium on Biomedical Imagining, IEEE, 2010, 1169–1172.
  • Coynel, D., Marrelec, G., Perlbarg, V., Doyon, J., Benali, H., « Conditional integration as a way of measuring mediated interactions between large-scale brain networks in functional MRI », in Conference proceedings IEEE International Symposium on Biomedical Imagining, International Symposium on Biomedical Imagining, IEEE, 2010, 652–655.
  • Dehaes, M., Gagnon, L., Vignaud, A., Valabrègue, R., Pélégrini-Issac, M., Lesage, F., Grebe, R., Wallois, F., Benali, H., « Quantitative effects of the sagittal sinus vein on occipital cortex measurements in diffuse optical imaging », in Biomedical Optics, OSA Biomedical Optics (BIOMED), OSA, 2010.
Maxime Descoteaux

Book chapters:
  • Descoteaux, M., Poupon, C., « Diffusion-Weighted MRI », in Comprehensive Biomedical Physics. Magnetic Resonance Imaging and Spectroscopy, Dževad Belkić Karen Belkić, ed., Vol. 3, Elseiver, 2014.
  • Descoteaux, M., Deriche, R., « From local q-ball estimation to fibre crossing tractography », in Handbook of Biomedical Imaging, N. Paragios, J. Duncan, N. Ayache, eds., New York, Springer, 2012.
  • Côté, M.-A., Boré, A., Girard, G., Houde, J.-C., Descoteaux, M., « Tractometer: Online evaluation system for tractography », in Medical Imagine Computing and Computer-Assisted Intervention - MICCAI 2012, Nicholas Ayache, Hervé Delingette, Polina Golland, Kensaku Mori, eds., Lecture Notes in Computer Science, Vol. 7510, Berlin, Springer, 2012.
Peer-reviewed journal articles:
  • De Bendictis, A., Petit, L., Descoteaux, M., Marras, C. E., Barbareschi, M., Corsini, F., Dallabona, M., Chioffi, F., Sarubbo, S., « New insights in the homotopic and heterotopic connectivity of the frontal portion of the human corpus callosum revealed by microdissection and diffusion tractography », Human Brain Mapping, 37:12 (December 2016), 4718–4735.
  • Paquette, M., Gilbert, G., Descoteaux, M., « Optimal DSI reconstruction parameter recommendations: Better ODFs and better connectivity », NeuroImage, 142 (November 2016), 1–13.
  • St-Jean, S., Coupé, P., Descoteaux, M., « Non local spatial and angular matching: Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising », Medical Image Analysis, 32 (August 2016), 115–130.
  • Daducci, A., Dal Palú, A., Descoteaux, M., Thiran, J.-P., « Microstructure informed tractography: pitfalls and open challenges », Frontiers in Neuroscience, 10 (June 2016), 247, 13 p.
  • Deslauriers-Gauthier, S., Marziliano, P., Paquette, M., Descoteaux, M., « The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions », Medical Image Analysis, 30 (May 2016), 46–59.
  • Renauld, E., Descoteaux, M., Bernier, M., Garyfallidis, E., Whittingstall, K., « Semi-automatic segmentation of optic radiations and LGN, and their relationship to EEG alpha waves », PLoS One, 11:7 (2016), e0156436, 21 p.
  • Paquette, M., Merlet, S., Gilbert, G., Deriche, R., Descoteaux, M., « Comparison of sampling strategies and sparsifying transforms to improve compressed sensing diffusion spectrum imaging », Magnetic Resonance in Medicine, 73:1 (January 2015), 401–416.
  • Girard, G., Whittingstall, K., Deriche, R., Descoteaux, M., « Towards quantitative connectivity analysis: Reducing tractography biases », NeuroImage, 98:1 (September 2014), 266–278.
  • Brandao, P., Jovem, C., Pereira Brasil-Neto, J., Tomaz, C., Descoteaux, M., Allam, N., « Congenital mirror movements: lack of decussation of pyramids  », Brain, 137:8 (August 2014), e292, 4 p.
  • Whittingstall, K., Bernier, M., Houde, J.-C., Fortin, D., Descoteaux, M., « Structural network underlying visuospatial imagery in humans », Cortex, 56 (July 2014), 85–98.
  • Vigneau-Roy, N., Bernier, M., Descoteaux, M., Whittingstall, K., « Regional variations in vascular density correlate with resting-state and task-evoked blood oxygen level-dependent signal amplitude », Human Brain Mapping, 35:5 (May 2014), 1906–1920.
  • Chamberland, M., Whittingstall, K., Fortin, D., Descoteaux, M., Mathieu, D., « Real-time multi-peak tractography for instantaneous connectivity display », Frontiers in Neuroinforamtics, 8:59 (May 2014), 1–15.
  • Daducci, A., Canales-Rodriguez, E. J., Descoteaux, M., Garyfallidis, E., Gur, Y., Lin, Y.-C., Mani, M., Merlet, S., Paquette, M., Ramirez-Manzanares, A., Reisert, M., Reis Rodrigues, P., Sepehrband, F., Caruyer, E., Choupan, J., Deriche, R., Jacob, M., Menegaz, G., Prckovska, V., Rivera, M., Wiaux, Y., Thiran, J.-P., « Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI  », IEEE Transactions on Medical Imaging, 33:2 (February 2014), 384–399.
  • Garyfallidis, E., Brett, M., Amirbekian, B., Rokem, A., van der Walt, S., Descoteaux, M., Nimmo-Smith, I., et al., « Dipy, a library for the analysis of diffusion MRI data  », Frontiers in Neuroinforamtics, 8:8 (February 2014), 1–17.
  • Gramfort, A., Poupon, C., Descoteaux, M., « Denoising and fast diffusion imaging with physically constrained sparse dictonary learning », Medical Image Analysis, 18:1 (January 2014), 36–49.
  • Coupé, P., Manjon, J. V., Chamberland, M., Hiba, B., Descoteaux, M., « Collaborative patch-based super-resolution for diffusion-weighted images », NeuroImage, 83 (December 2013), 245–261.
  • Roy, M., Nugent, S., Tremblay, S., Descoteaux, M., Beaudoin, J.-F., Tremblay, L., Lecomte, R., Cunnane, S. C., « A dual tracer PET-MRI protocol for the quantitative measure of regional brain energy substrates uptake in the rat », Journal of visualized experiments, 82 (December 2013), e50761, 1–9.
  • Jr. Laforce, R., Roy, M., Descoteaux, M., Berthelot, C., Bouchard, J.-P., « Neurocognitive deficits and diffusion MR imaging abnormalities in a case of adult-onset autosomal dominant leudystrophy », Translational Neuroscience, 4:4 (December 2013), 513–515.
  • Côté, M.-A., Girard, G., Boré, A., Garyfallidis, E., Houde, J.-C., Descoteaux, M., « Tractometer: towards validation of tractography pipelines », Medical Image Analysis, 17:7 (October 2013), 844–857.
  • Roy, M., Nugent, S., Tremblay, S., Tremblay-Mercier, J., Courchesne-Loyer, A., Beaudoin, J.-F., Tremblay, L., Descoteaux, M., Lecomte, R., Cunnane, S. C., « The ketogenic diet increases brain glucose and ketone uptake in aged rats: a dual tracer PET and volumetric MRI study », Brain Research, 1488 (December 2012), 14–23.
  • Fortin, D., Aubin-Lemay, C., Boré, A., Girard, G., Houde, J.-C., Whittingstall, K., Descoteaux, M., « Tractography in the study of the human brain: a neurosurgical perspective », Canadian Journal of Neurological Sciences 39:6 (November 2012), 747–756.
  • Descoteaux, M., « De l’estimation locale par imagerie q-ball à la tractographie des croisements de fibres », Technique et science informatiques, 31:3 (2012), 375–396.
  • Sharman, M. A., Cohen-Adad, J., Descoteaux, M., Messé, A., Benali, H., Lehéricy, S., « Impact of outliers on diffusion tensor and q-ball imaging: Clinical implications and correction strategies », Journal of Magnetic Resonance Imaging, 33:6 (June 2011), 1491–1502.
  • Cohen-Adad, J., Descoteaux, M., Wald, L. L., « Quality assessment of high angular resolution diffusion imaging data using bootstrap on q-ball reconstruction », Journal of Magnetic Resonance Imaging, 33:5 (May 2011), 1194–1208.
  • Fillard, P., Descoteaux, M., Goh, A., Gouttard, S., Jeurissen, B., Malcolm, J., Ramirez-Manzanares, A., Reisert, M., Sakaie, K., Tensaouti, F., Yo, T.-S., Poupon, C., Mangin, J.-F., « Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom », NeuroImage, 56:1 (May 2011), 220–234.
  • Guevara, P., Poupon, C., Rivière, D., Cointepas, Y., Descoteaux, M., Thirion, B., Mangin, J.-F., « Robust clustering of massive tractography datasets  », NeuroImage, 54:3 (February 2011), 1975–1993.
  • Descoteaux, M., Deriche, R., Le Bihan, D., Mangin, J.-F., Poupon, C., « Multiple q-shell diffusion propagator imaging », Medical Image Analysis, 15:4 (August 2010), 603–621.
  • Descoteaux, M., Poupon, C., Mangin, J.-F., Kezele, I., Poupon, F., « Spherical wavelet transform for ODF sharpening  », Medical Image Analysis, 14:3 (June 2010), 332–342.
Peer-reviewed conference proceedings:
  • Guevara, P., Poupon, C., Rivière, D., Cointepas, Y., Marrakchi, L., Descoteaux, M., Fillard, P., Thirion, B., Mangin, J.-F., « Inference of a HARDI fiber bundle atlas using a two-level clustering trategy  », in Medical Image Computing and Computer-Assisted Intervention — MICCAI 2010, 13th International Conference on Medical Image Computing and Computer-Assisted Intervention — MICCAI 2010 (Beijing, 2010), T. Jiang, N. Navab, J. P. W. Pluim, M. A. Viergever, eds., Lecture Notes in Computer Science, Vol. 6361, Berlin, Springer, 2010, 550–557.
Christophe Grova

Book chapters:
  • Jolicoeur, P., Dell’Acqua, R., Brisson, B., Robitaille, N., Sauvé, K., Prime, D., Grimault, S., Marois, R., Sessa, P., Grova, C., Lina, J.-M., Dubarry, A.-S., Leblanc, É., « Visual spatial attention and visual short-term memory: Electromagnetic explorations of mind », in Tutorials in Visual Cognition, V. Coltheart, eds., Macquarie Monographs in Cognitive Science, Hove, Psychology Press, 2010.
Peer-reviewed journal articles:
  • Chowdhury, R. A., Merlet, I., Birot, G., Kobayashi, E., Biraben, A., Wendling, F., Lina, J.-M., Albera, L., Grova, C., Nica, A., « Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data », NeuroImage, 143 (December 2016), 175–195.
  • Maneshi, M., Vahdat, S., Gotman, J., Grova, C., « Validation of shared and specific independent component analysis (SSICA) for between-group comparisons in fMRI », Frontiers in Neuroscience, 10 (September 2016), 417, 19 p.
  • Pellegrino, G., Hedrich, T., Chowdhury, R. A., Hall, J. A., Lina, J.-M., Dubeau, F., Kobayashi, E., Grova, C., « Source localization of the seizure onset zone from ictal EEG/MEG data », Human Brain Mapping, 37:7 (July 2016), 2528–2546.
  • Lee, K., Lina, J.-M., Gotman, J., Grova, C., « SPARK: Sparsity-based analysis of reliable $k$-hubness and overlapping network structure in brain functional connectivity », NeuroImage, 134 (July 2016), 434–449.
  • Grova, C., Aiguabella, M., Zelmann, R., Lina, J.-M., Hall, J. A., Kobayashi, E., « Intracranial EEG potentials estimated from MEG sources: A new approach to correlate MEG and iEEG data in epilepsy », Human Brain Mapping, 37:5 (May 2016), 1661–1683.
  • Pellegrino, G., Machado, A., von Ellenrieder, N., Watanabe, S., Hall, J. A., Kobayashi, E., Grova, C., « Hemodynamic response to interictal epileptiform discharges addressed by personalized EEG-fNIRS recordings », Frontiers in Neuroscience, 10 (March 2016), 102, 20 p.
  • von Ellenrieder, N., Pellegrino, G., Hedrich, T., Gotman, J., Lina, J.-M., Grova, C., Kobayashi, E., « Detection and magnetic source imaging of fast oscillations (40–160 Hz) recorded with magnetoencephalography in focal epilepsy patients », Brain Topography, 29:2 (March 2016), 218–231.
  • Chowdhury, R. A., Hedrich, T., Dubeau, F., Lina, J.-M., Grova, C., Kobayashi, E., Heers, M., Hall, J. A., « Localization accuracy of distributed inverse solutions for electric and magnetic source imaging of interictal epileptic discharges in patients with focal epilepsy », Brain Topography, 29:1 (January 2016), 162–181.
  • Tohka, J., Bellec, P., Grova, C., Reilhac, A., « Simulation and validation in brain image analysis », Computational Intelligence and Neuroscience, 2016 (2016), 1041058, 2 p.
  • Dansereau, C., Bellec, P., Lee, K., Pittau, F., Gotman, J., Grova, C., « Detection of abnormal restong-state networks in individual patients suffering from focal epilepsy », Frontiers in Neurology, 8:419 (December 2014), 21 p.
  • Heers, M., Hedrich, T., An, D., Grova, C., Kobayashi, E., « Spatial correlation of hemodynamic changes related to interictal epilectic discharges with electric and magnetic source imaging », Human Brain Mapping, 35:9 (September 2014), 4393–4414.
  • Lina, J.-M., Chowdhury, R. A., Lemay, É., Kobayashi, E., Grova, C., « Wavelet-based localization of oscillatory sources from magnetoencephalography data », IEEE Transactions on Biomedical Engineering, 61:8 (August 2014), 2350–2364.
  • Maneshi, M., Vahdat, S., Fahoum, F., Grova, C., Gotman, J., « Specific resting-state brain networks in mesial temporal lobe epilepsy », Frontiers in Neurology, 5:127 (July 2014), 8 p.
  • Machado, A., Marcotte, O., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal optode montage on electroencephalography/ functional near-infrared spectroscopy caps dedicated to study epileptic discharges », Journal of Biomedical Optics, 19:2 (February 2014), 026010.
  • Machado, A., Marcotte, O., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal optode montage on electroencephalography/functional near-infrared spectroscopy caps dedicated to study epileptic discharges », Journal of Biomedical Optics, 19:2 (February 2014), 026010.
  • Chowdhury, R. A., Lina, J.-M., Kobayashi, E., Grova, C., « MEG source localization of spatially extended generators of epileptic activity: comparing entropic and hierarchical bayesian approaches », PLoS One, 8:2 (2013), e55969.
  • Vahdat, S., Maneshi, M., Grova, C., Gotman, J., Milner, T. E., « Shared and specific independent components analysis for between-group comparison  », Neural Computation, 24:11 (November 2012), 3052–3090.
  • Pittau, F., Grova, C., Moeller, F., Dubeau, F., Gotman, J., « Patterns of altered functional connectivity in mesial temporal lobe epilepsy », Epilepsia, 53:6 (June 2012), 1013–1023.
  • Maneshi, M., Moeller, F., Fahoum, F., Gotman, J., Grova, C., « Resting-state connectivity of the sustained attention network correlates with disease duration in idiopathic generalized epilepsy  », PLoS One, 7:12 (2012), e50359.
  • Machado, A., Lina, J.-M., Tremblay, J., Lassonde, M., Nguyen, D. K., Lesage, F., Grova, C., « Detection of hemodynamic responses to epileptic activity using simultaneous Electro-Encephalography (EEG) / Near Infra Red Spectroscopy (NIRS) acquisitions », NeuroImage, 56:1 (May 2011), 114–125.
  • Moeller, F., Maneshi, M., Pittau, F., Dubeau, F., Grova, C., Gotman, J., Gholipour, T., Bellec, P., « Functional connectivity in patients with idiopathic generalized epilepsy  », Epilepsia, 52:3 (March 2011), 515–522.
Karim Jerbi

Book chapters:
  • Vidal, J. R., Hamamé, C. R., Jerbi, K., Dalal, S., Ciumas, C., Perrone-Bertolotti, M., Ossandon, T., Minotti, L., Kahane, P., Lachaux, J.-P., « Localization cognitive functions in epilepsy with intracranial gamma-band dynamic responses », in Neuropsychology in the Care of People with Epilepsy, Christoph Helmstaedter Bruce Hermann, Maryse Laasonde, Philippe Kahane, Alexis Arzimanoglou, eds., Progress in epileptic disorders, Vol. 11, Paris, John Libbey Eurotext, 2011.
Peer-reviewed journal articles:
  • Bastin, J., Deman, P., David, O., Gueguen, M., Benis, D., Minotti, L., Hoffmann, D., Combrisson, É., Kujala, J., Perrone-Bertolotti, M., Kahane, P., Lachaux, J.-P., Jerbi, K., « Direct recordings from human nterior insula reveal its leading role within the error-monitoring network », Cerebral Cortex, 27:2 (February 2017), 1545–1557.
  • Soto, J. L. P., Lachaux, J.-P., Baillet, S., Jerbi, K., « A multivariate method for estimating cross-frequency neuronal interactions and correcting linear mixing in MEG data, using canonical correlations », Journal of Neuroscience Methods, 271 (September 2016), 169–181.
  • Foster, B. L., He, B. J., Honey, C. J., Jerbi, K., Maier, A., Saalmann, Y. B., « Spontaneous neural dynamics and multi-scale network organization », Frontiers in Systems Neuroscience, 10 (February 2016), 7, 20 p.
  • Thiery, T., Lajnef, T., Jerbi, K., Arguin, M., Aubin, M., « Decoding the locus of covert visuospatial attention from EEG signals », PLoS One, 11:8 (2016), e0160304, 17 p.
  • Vidal, J. R., Perrone-Bertolotti, M., Levy, J., De Palma, L., Minotti, L., Kahane, P., Bertrand, O., Lutz, A., Jerbi, K., Lachaux, J.-P., « Neural repetition suppression in ventral occipito-temporal cortex occurs during conscious and unconscious processing of frequent stimuli », NeuroImage, 95 (July 2014), 129–135.
  • Hamamé, C. R., Vidal, J. R., Perrone-Bertolotti, M., Ossandon, T., Jerbi, K., Kahane, P., Bertrand, O., Lachaux, J.-P., « Functional selectivity in the human occipitotemporal cortex during natural vision: evidence from combined intracranial EEG and eye-tracking », NeuroImage, 95 (July 2014), 276–286.
  • Breton, A., Jerbi, K., Henaff, M.-A., Cheylus, A., Baudouin, J.-Y., Schmitz, C., Krolak-Salmon, P., Van der Henst, J.-B., « Face the hierarchy: ERP and oscillatory brain responses in social rank processing », PLoS One, 9:3 (March 2014), e91451.
  • Korczyn, A. D., Schachter, S. C., Brodie, M. J., Dalal, S., Engel Jr., J., Guekht, A., Hecimovic, H., Jerbi, K., Kanner, A. M., Johannessen Landmark, C., Mares, P., Murisic, P., Meletti, S., Mula, M., Patsalos, P. N., Reuber, M., Ryvlin, P., Stillova, K., Tuchman, R., Rektor, I., « Epilepsy, cognition, and neuropsychiatry (Epilepsy, Brain, and Mind, part 2) », Epilepsy & Behavior, 28:2 (August 2013), 283–302.
  • Dalal, S., Osipova, D., Bertrand, O., Jerbi, K., « Oscillatory activity of the human cerebellum: the intracranial electrocerebellogram revisited », Neuroscience & Biobehavioral Reviews, 37:4 (May 2013), 585–593.
  • Gross, J., Baillet, S., Barnes, G., Henson, R. N., Hillebrand, A., Jensen, O., Jerbi, K., Litvak, V., Maess, B., Oostenveld, R., Parkkonen, L., Taylor, J. R., van Wassenhove, V., Wibral, M., Schoffelen, J.-M., « Good practice for conducting and reporting MEG research  », NeuroImage, 65 (January 2013), 349–363.
  • Perrone-Bertolotti, M., Kujala, J., Vidal, J. R., Hamamé, C. R., Ossandon, T., Bertrand, O., Minotti, L., Kahane, P., Jerbi, K., Lachaux, J.-P., « How silent is silent reading? Intracerebral evidence for top-down activation of temporal voice areas during reading », The Journal of Neuroscience, 32:49 (December 2012), 17554–17562.
  • Bastin, J., Lebranchu, P., Jerbi, K., Kahane, P., Orban, G., Lachaux, J.-P., Berthoz, A., « Direct recording in human cortex reveal the dynamics of gamma-band [50-150 Hz] activity during pursuit eye movement control », NeuroImage, 63:1 (October 2012), 339–347.
  • Worrell, G. A., Jerbi, K., Kobayashi, K., Lina, J.-M., Zelmann, R., Le Van Quyen, M., « Recording and analysis techniques for high-frequency oscillations », Progress in Neurobiology, 98:3 (September 2012), 265–278.
  • Vidal, J. R., Freyermuth, S., Jerbi, K., Hamamé, C. R., Ossandon, T., Bertrand, O., Minotti, L., Kahane, P., Berthoz, A., Lachaux, J.-P., « Long-distance amplitude correlations in the high gamma band reveal segregation and integration within the reading network », The Journal of Neuroscience, 32:19 (May 2012), 6421–6434.
  • Ossandon, T., Vidal, J. R., Ciumas, C., Jerbi, K., Hamamé, C. R., Dalal, S., Bertrand, O., Minotti, L., Kahane, P., Lachaux, J.-P., « Efficient “pop-out” visual search elicits broadband gamma activity in the dorsal attention network », The Journal of Neuroscience, 32:10 (March 2012), 3414–3421.
  • Hamamé, C. R., Vidal, J. R., Ossandon, T., Jerbi, K., Dalal, S., Bertrand, O., Kahane, P., Lachaux, J.-P., Minotti, L., « Reading the mind’s eye: online detection of visuo-spatial working memory and visual imagery in the inferior temporal lobe », NeuroImage, 59:1 (January 2012), 872–879.
  • Vidal, J. R., Ossandon, T., Jerbi, K., Dalal, S., Minotti, L., Ryvlin, P., Kahane, P., Lachaux, J.-P., « Category-specific visual responses: an intracranial study comparing gamma, beta, alpha, and ERP response selectivity », Frontiers in Human Neuroscience, 4:195 (November 2011), 23 p.
  • Ossandon, T., Jerbi, K., Vidal, J. R., Bayle, D. J., Henaff, M.-A., Jung, J., Minotti, L., Bertrand, O., Kahane, P., Lachaux, J.-P., « Transient suppression of broadband gamma power in the default-mode networks is correlated with task complexity and subject performance », The Journal of Neuroscience, 31:41 (October 2011), 14521–14530.
  • Ogawa, T., Riera, J., Goto, T., Sumiyoshi, A., Nonaka, H., Bertrand, O., Kawashima, R., Jerbi, K., « Large-scale heterogeneous representation of sound attributes in rat primary auditory cortex: from unit activity to population dynamics », The Journal of Neuroscience, 31:41 (October 2011), 14639–14653.
  • Dalal, S., Vidal, J. R., Hamamé, C. R., Ossandon, T., Bertrand, O., Lachaux, J.-P., Jerbi, K., « Spanning the rich spectrum of the human brain: slow waves to gamma and beyond », Brain Structure and Function, 216:2 (June 2011), 77–84.
  • Aguera, P.-E., Jerbi, K., Caclin, A., Bertrand, O., « ELAN: A Software package for analysis and visualization of MEG, EEG, and LFP signals », Computational Intelligence and Neuroscience, 2011 (2011), Article 158970, 11 p.
  • Jerbi, K., Vidal, J. R., Mattout, J., Maby, E., Bauchet-Lecaignard, F., Ossandon, T., Hamamé, C. R., Dalal, S., Bouet, R., Lachaux, J.-P., Leahy, R. M., Baillet, S., Garnero, L., Delpuech, C., Bertrand, O., « Inferring hand movement kinematics from MEG, EGG and intrracranial EGG: from brain-machine interface to motor rehabilitation », IRBM, 32:1 (2011), 8–18.
  • Dalal, S., Hamamé, C. R., Eichenlaub, J.-B., Jerbi, K., « Intrinsic coupling between gamma oscillations, neuronal discharges, and slow cortical oscillations during human slow-wave sleep », The Journal of Neuroscience, 30:43 (October 2010), 1485–1487.
  • Luo, L., Rodriguez, E., Jerbi, K., Lachaux, J.-P., Martinerie, J., Corbetta, M., Shulman, G. L., Piomelli, D., Turrigiano, G. G., Nelson, S. B., Joëls, M., de Kloet, E. R., Holsboer, F., Amodio, D. M., Frith, C. D., Block, M. L., Zecca, L., Hong, J.-S., Dantzer, R., Kelley, K. W., Craig, A. D. B., « Ten yeras of Nature reviews neuroscience: insights from highly cited  », Nature Reviews Neuroscience, 11:10 (October 2010), 718–726.
  • Jung, J., Jerbi, K., Ossandon, T., Ryvlin, P., Isnard, J., Bertrand, O., Guénot, M., Mauguière, F., Lachaux, J.-P., « Brain responses to success and failure: Direct recondings from human cerebral cortex », Human Brain Mapping, 31:8 (August 2010), 1271–1232.
  • Jerbi, K., Vidal, J. R., Ossandon, T., Dalal, S., Jung, J., Hoffmann, D., Minotti, L., Bertrand, O., Kahane, P., Lachaux, J.-P., « Exploring the electrophysiological correlates of the default-mode network with intracerebral EEG », Frontiers in Systems Neuroscience, 4:27 (June 2010), 9 p.
Frédéric Lesage

Book chapters:
  • Castonguay, A., Thomas, S., Lesage, F., Casanova, C., « Optogenetic tools for confined stimulation in deep brain structures », in Optogenetics, A. Kianianmomeni, eds., Methods in Molecular Biology, Vol. 1408, New York, Springer, 2016.
  • Bélanger, S., Ferreira de souza, O., Pouliot, P., Casanova, C., Lesage, F., « Neurovascular coupling in the deep brain using confocal fiber-optic endomicroscopy », in Neurovascular Coupling Methods, Mingrui Zhao, Hongtao Ma, Theodoro H Schwartz, eds., Neuromethods, Vol. 88, New York, Springer, 2014.
Peer-reviewed journal articles:
  • Zhang, C., Moeini, M., Lesage, F., « Spatial landscape of oxygen in and around microvasculature during epileptic events », Neurophotonics, 4:1 (January 2017).
  • Pouliot, P., Gagnon, L., Lam, T., Bowen Chris., Kakkar, A., Sakadzic, S., Lesage, F., Avti, P. K., Desjardins, M., Thorin, É., Boas, D. A., « Magnetic resonance fingerprinting based on realistic vasculature in mice », NeuroImage (December 2016), 436-445.
  • Tardif, P.-L., Bertrand, M.-J., Abran, M., Castonguay, A., Lefebvre, J., Stähli, B. E., Merlet, N., Mihalache-Avram, T., Geoffroy, P., Mecteau, M., Busseui, D., Ni, F., Abulrob, A., Rhéaume, É., L’Allier, P., Tardif, J.-C., Lesage, F., « Validating intravascular imaging with serial optical coherence tomography and confocal fluorescence microscopy », International Journal of Molecular Sciences, 17:12 (December 2016), 2110.
  • Auger, H., Bherer, L., Boucher, É., Hoge, R. D., Lesage, F., Dehaes, M., « Quantification of extra-cerebral and cerebral hemoglobin concentrations during physical exercise using time-domain near infrared spectroscopy », Biomedical Optics Express, 7:10 (October 2016), 3826–3842.
  • Fraser, S. A., Dupuy, O., Pouliot, P., Lesage, F., Bherer, L., « Comparable cerebral oxygenation patterns in younger and older adults during dual-task walking with increasing load », Frontiers in Aging Neuroscience, 8 (October 2016), 240, 9 p.
  • Pichette, J., Laurence, A., Angulo, L., Lesage, F., Bouthillier, A., Nguyen, D. K., Leblond, F., « Intraoperative video-rate hemodynamic response assessment in human cortex using snapshot hyperspectral optical imaging », Neurophotonics, 3:4 (October 2016), 045003.
  • Gagnon, L., Sakadzic, S., Lesage, F., Pouliot, P., Dale, A., Devor, A., Buxton, R. B., Boas, D. A., « Validation and optimization of hypercapnic-calibrated fMRI from oxygen-sensitive two-photon microscopy », Philosophical Transactions of the Royal Society B. Biological Sciences, 371:1705 (October 2016), 20150359.
  • Zerouali Boukhal, Y., Pouliot, P., Robert, M., Mohamed, I., Bouthillier, A., Lesage, F., Nguyen, D. K., « Magnetoencephalographic signatures of insular epileptic spikes based on functional connectivity », Human Brain Mapping, 37:9 (September 2016), 3250–3261.
  • Gagnon, L., Sakadzic, S., Lesage, F., Pouliot, P., Dale, A., Devor, A., Buxton, R. B., Boas, D. A., « Validation and optimization of hypercapnic-calibrated fMRI from oxygen-sensitive two-photon microscopy », Philosophical Transactions of the Royal Society A. Mathematical, Physical & Engineering Sciences, 371:1705 (August 2016).
  • Li, B., Lee, J., Boas, D. A., Lesage, F., « Contribution of low- and high-flux capillaries to slow hemodynamic fluctuations in the cerebral cortex of mice », Journal of Cerebral Blood Flow & Metabolism, 36:8 (August 2016), 1351–1356.
  • Desjardins, M., Sylvestre, J.-P., Jafari, R., Kulasekara, S., Rose, K., Trussart, R., Arbour, J. D., Hudson, C., Lesage, F., « Preliminary investigation of multispectral retinal tissue oximetry mapping using a hyperspectral retinal camera », Experimental Eye Research, 146 (May 2016), 330–340.
  • Bélanger, S., Oliveira Ferreira de Souza, B., Casanova, C., Lesage, F., « Correlation of hemodynamic and fluorescence signals under resting state conditions in mice's barrel field cortex », Neuroscience Letters, 616 (March 2016), 177–181.
  • Peng, K., Nguyen, D. K., Vannasing, P., Tremblay, J., Lesage, F., Pouliot, P., « Using patient-specific hemodynamic response function in epileptic spike analysis of human epilepsy: a study based on EEG–fNIRS », NeuroImage, 126 (February 2016), 239–255.
  • Lam, T., Avti, P. K., Pouliot, P., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Surface engineering of SPIONs: role of phosphonate ligand multivalency in tailoring their efficacy », Nanotechnology, 27 (2016), 415602, 11 p.
  • Peng, K., Pouliot, P., Lesage, F., Nguyen, D. K., « Multichannel continuous electroencephalography-functional near-infrared spectroscopy recording of focal seizures and interictal epileptiform discharges in human epilepsy: A review », Neurophotonics, 3:3 (2016), 031402, 12 p.
  • Gauthier, C., Lefort, M., Mekary, S., Desjardins-Crépeau, L., Skimminge, A., Iversen, P., Madjar, C., Desjardins, M., Lesage, F., Garde, E., Frouin, F., Bherer, L., Hoge, R. D., « Hearts and minds: linking vascular rigidity and aerobic fitness with cognitive aging », Neurobiology of aging, 36:1 (January 2015), 301–314.
  • Desjardins, M., Berti, R., Lefebvre, J., Dubeau, S., Lesage, F., « Aging-related differences in cerebral capillary blood flow in anesthetized rats », Neurobiology of Aging, 35:8 (August 2014), 1947–1955.
  • Li, B., Maafi, F., Berti, R., Pouliot, P., Lesage, F., « Hybrid FMT-MRI applied to in-vivo atherosclerosis imagining  », Biomedical Optics Express, 5:5 (April 2014), 1664–1676.
  • Castonguay, A., Thomas, S., Lesage, F., Casanova, C., « Repetitive and Retinotopically restricted activation of the Dorsal lateral geniculate nucleus with optogenetics », PLoS One, 9:4 (April 2014), e94633, 8 p.
  • Peng, K., Nguyen, D. K., Tayah, T., Vannasing, P., Tremblay, J., Sawan, M., Lassonde, M., Lesage, F., Pouliot, P., « fNIRS-EGG study of focal interictal epileptiform discharges », Epilepsy Research, 108:3 (March 2014), 491–505.
  • Desjardins, M., Berti, R., Pouliot, P., Dubeau, S., Lesage, F., « Multimodal study of the hemodynamic response to hypercapnia in anesthetized aged rats », Neuroscience Letters, 563:4 (March 2014), 33–37.
  • Lee, J., Jiang, J. Y., Wu, W., Lesage, F., Boas, D. A., « Statistical intensity variation analysis for rapid volumetric imaging of capillary network flux », Biomedical Optics Express, 5:4 (March 2014), 1160–1172.
  • Beaumont, É., Guevara Codina, E., Dubeau, S., Lesage, F., Nagai, M., Popovic, M., « Functional electrical stimulation post-spinal cord injury improves locomotion and increases afferent input into the central nervous system in rats », The Journal of Spinal Cord Medicine, 37:1 (January 2014), 93–100.
  • Kamrani, E., Lesage, F., Sawan, M., « Low-noise, high-gain transimpedance amplifier integrated with SiAPD for low-intendsty near-infrared light detection », IEEE Sensors Journal 14:1 (January 2014), 258–269.
  • Spinelli, L., Botwicz, M., Zolek, N., Kacprzak, M., Milej, D., Sawosz, P., Liebert, A., Leclair, S., Bouchard, J.-P., Noiseux, I., Gallant, P., Mermut, O., Pifferi, A., Torricelli, A., Cubeddu, R., Ho, H.-C., Mazurenka, M., Wabnitz, H., Klauenberg, K., Bodnar, O., Elster, C., Bénazech-Lavoué, M., Bérubé-Lauzière, Y., Lesage, F., Di Ninni, P., Martelli, F., Zaccanti, G., « Determination of reference values for optical properties of liquid phantoms based on intralipid and INdia ink », Biomedical Optics Express, 5:7 (2014), 2037–2053.
  • Ng, V. W. K., Avti, P. K., Bédard, M., Lam, T., Rouleau, L., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Miktoarm star conjugated multifunctional gold nanoshells: synthesis and an evalution of biocompatibility and cellular uptake », Journal of Materials Chemestry B, 2 (2014), 6334–6344.
  • Li, B., Berti, R., Abran, M., Lesage, F., « Ultrasound guided fluorescence molecular tomography with improved quantification by an attenuaion compensated born-normalization and in vivo preclinical study of cancer », Review of Scientific Instruments, 85:5 (2014), 053703, 12 p.
  • Guevara Codina, E., Berti, R., Londono, I., Xie, N., Bellec, P., Lesage, F., Lodygensky, G. A., « Imaging of an inflammatory injury in the newborn rat brain with photoacoustic tomography », PLoS One, 8:12 (December 2013), e83045.
  • Lam, T., Pouliot, P., Avti, P. K., Lesage, F., Kakkar, A., « Superparamagnetic iron oxide based nanoprobes for imaging and theranostics », Advances in Colloid and Interface Science, 199 (November 2013), 95–113.
  • Lee, J., Wu, W., Lesage, F., Boas, D. A., « Multiple-capillary measurement of RBC speed, flux, and density with optical coherence tomography », Journal of Cerebral Blood Flow & Metabolism 33:11 (November 2013), 1707–1710.
  • Guevara Codina, E., Sadekova, N., Girouard, H., Lesage, F., « Optical imaging of resting-state functional connectivity in a novel arterial stiffness model », Biomedical Optics Express, 4:11 (October 2013), 2332–2346.
  • Kamrani, E., Lesage, F., Sawan, M., « On-chip integrated photoreceiver for real-time brain imaging », Transactions of Japanese Society for Medical and Biological Engineering, 51 (September 2013), R–75.
  • Ng, V. W. K., Berti, R., Lesage, F., Kakkar, A., « Gold: a versatile tool for in vivo imaging », Journal of Materials Chemestry B, 2013:1 (August 2013), 9–25.
  • Guevara Codina, E., Pouliot, P., Nguyen, D. K., Lesage, F., « Optical imaging of acute epileptic networks in mice », Journal of Biomedical Optics, 18:7 (July 2013), 76021, 8 p.
  • El Helou, J., Bélanger-Nelson, E., Freyburger, M., Dorsaz, S., Curie, T., La Spada, F., Gaudreault, P.-O., Beaumont, É., Pouliot, P., Lesage, F., Frank, M. G., Franken, P., Mongrain, V., « Neuroligin-1 links neuronal activity to spleep-wake regulation », Proceedings of the National Academy of Sciences of the United States of America, 110:24 (June 2013), 9974–9979.
  • Sadekova, N., Vallerand, D., Guevara Codina, E., Lesage, F., Girouard, H., « Carotid calcification in mice: a new model to study the effects of arterial stiffness on the brain  », Journal of the American Heart Association, 2:3 (June 2013), e000224.
  • Sawan, M., Salam, M. T., Le Lan, J., Kassab, A., Gelinas, S., Vannasing, P., Lesage, F., Lassonde, M., Nguyen, D. K., « Wireless recording systems: from noninvasive EEG-NIRS to invasive EEG devices », IEEE Transactions on Biomedical Circuits and Systems, 7:2 (April 2013), 186–195.
  • Kamrani, E., Lesage, F., Sawan, M., « Efficient premature edge brreakdown prevention in SiAPD fabrication using the standard CMOS process », Semiconductor Science and Technology, 28:4 (April 2013), 045008, 6 p.
  • Nguyen, D. K., Tremblay, J., Pouliot, P., Vannasing, P., Florea, O., Carmant, L., Lepore, F., Sawan, M., Lesage, F., Lassonde, M., « Noninvasive continuos functional near-infrared spectroscopy combined with electroencephalography recording of frontal lobe seizures », Epilepsia, 54:2 (February 2013), 331–340.
  • Laguë-Beauvais, M., Brunet, J., Lesage, F., Bherer, L., « A fNIRS investigation of switching and inhibition during the modified stroop task in younger and older adults », NeuroImage, 64 (January 2013), 485–495.
  • Rouleau, L., Berti, R., Ng, V. W. K., Matteau-Pelletier, C., Lam, T., Saboural, P., Kakkar, A., Lesage, F., Rhéaume, É., Tardif, J.-C., « VCAM-1-targeting gold nanoshell probe for photoacoustic imaginng of atherosclerotic plaque in mice », Contrast Media & Molecular Imagining, 8:1 (January 2013), 27–39.
  • Desjardins, M., Pouliot, P., Perlbarg, V., Desjardins-Crépeau, L., Gauthier, C., Leclerc, P.-O., Hoge, R. D., Bherer, L., Benali, H., Lesage, F., « Association of cardiovascular fitness with cognition, cerebral blood flow and oxygenation in aging  », NeuroImage (2013), submitted.
  • Kamrani, E., Lesage, F., Sawan, M., « Fully on-chip integrated photodetector front-end dedicated to real-time portable optical brain imaging », Optics and Photonics Journal, 2:4 (December 2012), 300–313.
  • Dubeau, S., Havlicek, M., Beaumont, É., Ferland, G., Lesage, F., Pouliot, P., « Neurovascular deconvolution of optical signals as a proxy for the true neuronal inputs », Journal of Neuroscience Methods, 2010:2 (September 2012), 247–258.
  • Gagnon, C., Desjardins-Crépeau, L., Tournier, I., Desjardins, M., Lesage, F., Greenwood, C. E., Bherer, L., « Near-infrared imagining of the effects of glucose ingestion and regulation on prefrontal activation during dual-task execution in healthy fasting older adults », Behavioural Brain Research, 232:1 (June 2012), 137–147.
  • Kahlaoui, K., Di Sante, G., Barbeau, J., Maheux, M., Lesage, F., Ska, B., Joanette, Y., « Contribution of NIRS to the study of prefrontal cortex for verbal fluency in aging », Brain and Language, 121:2 (May 2012), 164–173.
  • Scherer, L. C., Fonseca, R. P., Amiri, M., Adrover-Roig, D., Marcotte, K., Giroux, F., Senhadji, M. N., Benali, H., Lesage, F., Ansaldo, A. I., « Syntactic processing in bilinguals: An fNIRS study », Brain and Language, 121:2 (May 2012), 144–151.
  • Scherer, L. C., Fonseca, R. P., Giroux, F., Senhadji, M. N., Marcotte, K., Tomitch, L. M. B., Benali, H., Lesage, F., Ska, B., Joanette, Y., « Neurofunctional (re)organization underlying narrative discourse processing in aging: Evidence from fNIRS », Brain and Language, 121:2 (May 2012), 174–784.
  • Bonnery, C., Leclerc, P.-O., Desjardins, M., Hoge, R. D., Bherer, L., Pouliot, P., Lesage, F., « Changes in diffusion path length with old age in diffuse optical tomography », Journal of Biomedical Optics, 17:5 (May 2012), 056002.
  • Bolduc, V., Baraghis, E., Duquette, N., Thorin-Trescases, N., Lambert, J., Lesage, F., Thorin, É., « Catechin prevents severe dyslipidemia-associated changes in wall biomechanics of cerebral arteries in LDLr-/-:hApoB+/+ mice and improves cerebral blood flow. », American Journal of Physiology. Heart and Circulatory Physiology, 302:6 (March 2012), H1330–H1339.
  • Pouliot, P., Tremblay, J., Robert, M., Vannasing, P., Lepore, F., Lassonde, M., Sawan, M., Nguyen, D. K., Lesage, F., « Nonlinear hemodynamic responses in human epilepsy: A multimodal analysis with fNIRS-EEG and fMRI-EEG », Journal of Neuroscience Methods, 204:2 (March 2012), 326–340.
  • Nguyen, D. K., Tremblay, J., Pouliot, P., Vannasing, P., Florea, O., Carmant, L., Lepore, F., Sawan, M., Lesage, F., Lassonde, M., « Non-invasive continuous EEG-fNIRS recording of temporal lobe seizures », Epilepsy Research, 99:1-2 (March 2012), 112–126.
  • Desjardins, M., Pouliot, P., Lesage, F., « Principles and applications of diffuse optical tomography for the brain », Current Medical Imaging Reviews, 8:3 (2012), 157–173.
  • Li, B., Abran, M., Matteau-Pelletier, C., Rouleau, L., Lam, T., Sharma, R., Rhéaume, É., Kakkar, A., Tardif, J.-C., Lesage, F., « Low-cost three-dimensional imaging system combining fluorescence and ultrasound », Journal of Biomedical Optics, 16:12 (December 2011), 126010, 10 p.
  • Baraghis, E., Bolduc, V., Lefebvre, J., Srinivasan, V. J., Boudoux, C., Thorin, É., Lesage, F., « Measurement of cerebral microvascular compliance in a model of atherosclerosis with optical coherence tomography », Biomedical Optics Express, 2:11 (November 2011), 3079–3093.
  • Baraghis, E., Devor, A., Fang, Q., Srinivasan, V. J., Wu, W., Lesage, F., Ayata, C., Kasischke, K. A., Boas, D. A., Sakadzic, S., « Two-photon microscopy of cortical NADH fluorescence intensity changes: correcting contamination from the hemodynamic response », Journal of Biomedical Optics, 16:10 (October 2011), 106003, 13 p.
  • Lareau, É., Lesage, F., Pouliot, P., Nguyen, D. K., Sawan, M., « Multichannel wearable system dedicated for simultaneous electroencephalography/near infrared spectroscopy real-time data acquisitions », Journal of Biomedical Optics, 16:9 (September 2011), 096014, 14 p.
  • Lareau, É., Lesage, F., Pouliot, P., Nguyen, D. K., Le Lan, J., Sawan, M., « Multichannel wearable system dedicated for simultaneous electroencephalography∕near-infrared spectroscopy real-time data acquisitions », Journal of Biomedical Optics, 16:9 (September 2011), 096014, 14 p.
  • Dubeau, S., Desjardins, M., Pouliot, P., Beaumont, É., Gaudreau, P., Ferland, G., Lesage, F., « Biophysical model estimation of neurovascular and metabolic parameters in a rat model of healthy aging », NeuroImage, 57:4 (August 2011), 1480–14891.
  • Dubeau, S., Gaudreau, P., Beaumont, É., Lesage, F., Ferland, G., « Cerebrovascular hemodynamic correlates of aging in the Lou/c rat: a model of healthy aging », NeuroImage, 56:4 (June 2011), 1892–1901.
  • Machado, A., Lina, J.-M., Tremblay, J., Lassonde, M., Nguyen, D. K., Lesage, F., Grova, C., « Detection of hemodynamic responses to epileptic activity using simultaneous Electro-Encephalography (EEG) / Near Infra Red Spectroscopy (NIRS) acquisitions », NeuroImage, 56:1 (May 2011), 114–125.
  • Tardif, J.-C., Lesage, F., Harel, F., Romeo, P., « Imaging biomarkers in atherosclerosis trials », Circulation. Cardiovascular Imaging, 4:3 (May 2011), 319–333.
  • Drouin, A., Bolduc, V., Thorin-Trescases, N., Bélanger, É., Fernandes, P., Baraghis, E., Lesage, F., Gillis, M.-A., Villeneuve, L., Hamel, E., Ferland, G., Thorin, É., « Catechin treatment improves cerebrovascular flow-mediated dilation and learning abilities in artherosclerotic mice », American Journal of Physiology. Heart and Circulatory Physiology, 300:3 (March 2011), H1032–H1043.
  • Dehaes, M., Gagnon, L., Lesage, F., Pélégrini-Issac, M., Vignaud, A., Valabrègue, R., Grebe, R., Wallois, F., Benali, H., « Quantitative investigation of the effect of the extra-cerebral vasculature in diffuse optical imaging: a simulation study », Biomedical Optics Express, 2:3 (March 2011), 680–695.
  • Drouin, A., Bolduc, V., Thorin-Trescases, N., Bélanger, É., Fernandes, P., Baraghis, E., Lesage, F., Gillis, M.-A., Villeneuve, L., Hamel, E., Ferland, G., Thorin, É., « Catechin treatment improves cerebrovascular flow-mediated dilation and learning abilities in atherosclerotic mice », American Journal of Physiology. Heart and Circulatory Physiology, 300:3 (March 2011), H1032–1043.
  • Goguin, A., Lesage, F., Leblond, H., Pélégrini-Issac, M., Rossignol, S., Benali, H., « A low-cost implantable near infrared imaging system of spinal cord activity in the cat », IEEE Transactions on Biomedical Circuits and Systems, 4:5 (October 2010), 329–335.
  • Venugopal, V., Chen, J., Lesage, F., Intes, X., « Full-field time-resolved fluorescence tomography of small animals », Optics Letters, 35:19 (October 2010), 3189–3191.
  • Lina, J.-M., Matteau-Pelletier, C., Dehaes, M., Desjardins, M., Lesage, F., « Wavelet-based estimation of the hemodynamic responses in diffuse optical imaging », Medical Image Analysis, 14:4 (August 2010), 606–616.
  • Brieu, N., Beaumont, É., Dubeau, S., Cohen-Adad, J., Lesage, F., « Characterization of the hemodynamic response in the rat lumbar spinal cord using intrinsic optical imaging and laser speckle », Journal of Neuroscience Methods, 191:2 (August 2010), 151–157.
  • Chen, J., Venugopal, V., Lesage, F., Intes, X., « Time-resolved diffuse optical tomography with patterned-light illumination and detection », Optics Letters, 35:13 (July 2010), 2121–2123.
  • Vanni, M., Provost, J., Lesage, F., Casanova, C., « Evaluation of receptive field size from higher harmonics in visuotopic mapping using continuous stimulation optical imaging », Journal of Neuroscience Methods, 189:1 (May 2010), 138–150.
  • Ouakli, N., Guevara Codina, E., Dubeau, S., Beaumont, É., Lesage, F., « Laminar optical tomography of the hemodynamic response in the lumbar spinal cord of rats », Optics Express, 18:10 (May 2010), 10068–10077.
  • Vanni, M., Provost, J., Bélanger, S., Lesage, F., Casanova, C., « A new avenue ifor image analysis bases on the Fourier decomposition of acquired signals: Application on in vivo optical imaging of the visual cortex », Molecular Imaging and Biology, 12:Suppl. 1, Proceedings of the 2009 World Molecular Imaging Congress Montreal, Canada, September 23–26 (February 2010), S266.
  • Bélanger, S., Abran, M., Intes, X., Casanova, C., Lesage, F., « Fast digital micromirror based diffuse optical tomography », Molecular Imaging and Biology, 12:Suppl. 1 (February 2010), S262.
  • Vanni, M., Provost, J., Casanova, C., Lesage, F., « Bimodal modulation and continuous stimulation in optical imaging to map direction selectivity », NeuroImage, 49:2 (January 2010), 1416–1431.
Other journal articles:
  • Bélanger, S., Abran, M., Intes, X., Casanova, C., Lesage, F., « Real-time diffuse optical tomography based on structured illumination », Journal of Biomedical Optics, 15:1 (January 2010), 016006, 7 pages.
Peer-reviewed conference proceedings:
  • Lu, X., Li, B., Moeini, M., Lesage, F., « Simultaneous two-photon imaging of cerebral oxygenation and capillary blood flow in atherosclerotic mice », in Neural Imaging and Sensing, Neural Imaging and Sensing (San Francisco, CA, 2017), Q. Luo, J. Ding, ed., Proceedings of SPIE, Vol. 10051, Bellingham, WA, SPIE, 2017, 100510O.
  • Gagnon, L., Sakadzic, S., Lesage, F., Pouliot, P., Dale, A., Devor, A., Buxton, R. B., Boas, D. A., « Improving the calibrated fMRI estimation of CMRO2 with oxygen-sensitive Two-Photon Microscopy », in Cancer Imaging and Therapy 2016, Fort Lauderdale, Florida, USA, OSA Publishing, 2016.
  • Li, B., Pouliot, P., Lesage, F., « MRI-guided fiber-based fluorescence molecular tomography for preclinical atherosclerosis », Photonics North Steve MacLean, David V. Plant, ed., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 92880R, 6pp.
  • Guevara Codina, E., Berti, R., Londono, I., Xie, N., Bellec, P., Lesage, F., Lodygensky, G. A., « Photoacoustic imaging of an inflammatory lesion model inthe neonatl rat brain  », Photonics North, Steven MacLean, David V. Plant, ed., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 92880Q, 6pp.
  • Guevara Codina, E., Gutiérrez-Hernandez, J. M., Lesage, F., Gonzalez, F. J., Castonguay, A., « Ex-vivo multi-modal microscopy of healthy skin », Photonics North, Steven MacLean, David V. Plant, ed., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 92880P, 6pp.
  • Gagnon, L., Sakadzic, S., Lesage, F., Musacchia, J. J., Lefebvre, J., Fang, Q., Yucel, M. A., Evans, K., Mandeville, E. T., Cohen-Adad, J., Polimeni, J., Yaseen, M. A., Lo, E. H., Greve, D., Buxton, R. B., Dale, A., Devor, A., Boas, D. A., « Underpinning the microvascular oigin of BOLD-fMRI with two-photon microscopy », Biomedical Optics Express, 2014.
  • Kamrani, E., Lesage, F., Sawan, M., « Towards on-chip integration of brain imaging photodetecors using standard CMOS process », in Conference proceeding: Annual International Conference od the IEEE Engineering in Medicine and Biology Society, Conference IEEE Engineering in Medicine and Biology Society, IEEE, 2013, 2668–2671.
  • Sabouni, A., Venkateswaran, A., Shmuel, A., Pouliot, P., Lesage, F., « An automated technique to determine the induced current in transcranial magnetic stimulation  », in IEEE Antennas and Propagation Society International Symposium (APSURSI), Antennas and Propagation Society International Symposium, IEEE, 2013, 2050–2051.
  • Kamrani, E., Chaddad, A., Lesage, F., Sawan, M., « Integrated transimpedance amplifier dedicated to low-noise and low-power biomedical applications », in 29th Southern Biomedical Engineering Conference (SBEC), 29th Southern Biomedical Engineering conference, IEEE, 2013, 5–6.
  • Kamrani, E., Lesage, F., Sawan, M., « On-chip single photon counting electronic circuitry dedicated real-time brain imaging applications », in 29th Southern Biomedical Engineering Conference (SBEC), 29th Southern Biomedical Engineering conference, IEEE, 2013, 61–62.
  • Kamrani, E., Lesage, F., Sawan, M., Hamady, M., « Modeling and characterizing optical CMOS sensors for biomedical low-intensity light detection », in 29th Southern Biomedical Engineering Conference (SBEC), 29th Southern Biomedical Engineering conference, IEEE, 2013, 83–84.
  • Lesage, F., Bonnery, C., Pouliot, P., « Diffusion Optical Tomography and Biophysical Modeling of the Aging Brain », in 4th International Conference on Biomedical Engineering in Vietnam, IFMBE Proceedings, Vo Van Toi Nguyen Bao Toan, Truong Quang Dang Khoa, Tran Ha Lien Phuong, eds., Vol. 40, Berlin, Springer, 2013, 250–253.
  • Kamrani, E., Lesage, F., Sawan, M., « Premature edge breakdown prevention techniques in CMOS APD fabrication », in IEEE 10th International New Circuits and Systems Conference (NEWCAS), 10th International New Circuits and Systems Conference (NEWCAS), IEEE, 2012, 345–348.
  • Pouliot, P., Tri Truong, V., Zhang, C., Dubeau, S., Lesage, F., « Tight neurovascular coupling in a rat model of quasi-periodic interictal spiking using multispectral optical imaging », in Proceedings of SPIE, Photonics North 2012, Vol. 8412, 2012, 841203, 6pp.
  • Sawan, M., Salam, M. T., Gélinas, J.-S., Le Lan, J., Lesage, F., Nguyen, D. K., « Combined NIRS-EEG remote recording for epilepsy and stroke real-time monitoring », in IEEE International Symposium on circuits and systems (ISCAS), International Symposium on circuits and systems (ISCAS), IEEE, 2012, 13–16.
  • Lesage, F., Dubeau, S., Zhang, C., Baraghis, E., Ferland, G., Gaudreau, P., Pouliot, P., « Intrinsic imaging and Doppler OCT assessment of vascular reactivity with aging under caloric restriction  », Biomedical Optics OSA, Imagig of vascular dynamics invited, 2012.
  • Spinelli, L., Botwicz, M., Zolek, N., Kacprzak, M., Milej, D., Liebert, A., Weigel, U., Durduran, T., Foschum, F., Kienle, A., Baribeau, F., Leclair, S., Bouchard, J.-P., Noiseux, I., Gallant, P., Mermut, O., Pifferi, A., Torricelli, A., Cubeddu, R., Ho, H.-C., Mazurenka, M., Wabnitz, H., Klauenberg, K., Bodnar, O., Elster, C., Bénazech-Lavoué, M., Bérubé-Lauzière, Y., Lesage, F., Di Ninni, P., Martelli, F., Zaccanti, G., « Inter-Laboratory Comparison of Optical Properties Performed on Intralipid and India Ink », Biomedical Optics, 2012.
  • Baraghis, E., Bolduc, V., Gillis, M.-A., Srinivasan, V. J., Thorin, É., Boudoux, C., Lesage, F., « Synthetic reconstruction of dynamic blood flow in cortical arteries using optical coherence tomography for the evalution of vessel compliance », in SPIE Proceedings , CNS Imaging and Stimulation II Vol. 7883, SPIE Digital Library, 2012, 10pp.
  • Abran, M., Matteau-Pelletier, C., Zerouali, K., Tardif, J.-C., Lesage, F., « Combined acoustic-photoacoustic and fluorescence imaging catheter for the detection of the atherosclerotic plaque », in Proceedings od SPIE, Biomedical Optics Symposium Alexander A. Oraevsky, Lihong V. Wang, ed., Vol. 7899, SPIE, 2011, 8pp.
  • Guevara Codina, E., Abran, M., Bélanger, S., Ouakli, N., Lesage, F., « Comparison of the performance of two depth-resolved optical imaging systems: laminar optical tomography and spatially modulated imaging », in Biomedical Applications of Light Scattering IV, Biomedical Applications of Light Scattering IV (San Francisco, CA, 2010), A. P. Wax, V. Backman, ed., Proceedings of SPIE, Vol. 7573, Bellingham, WA, SPIE, 2010, 757317, 10 pages.
  • Venugopal, V., Chen, J., Lesage, F., Intes, X., « Time resolved diffuse optical tomography using a digital light processor », in Biomedical Optics, OSA Biomedical Optics (BIOMED) OSA, 2010.
  • Dehaes, M., Gagnon, L., Vignaud, A., Valabrègue, R., Pélégrini-Issac, M., Lesage, F., Grebe, R., Wallois, F., Benali, H., « Quantitative effects of the sagittal sinus vein on occipital cortex measurements in diffuse optical imaging », in Biomedical Optics, OSA Biomedical Optics (BIOMED), OSA, 2010.
Research reports:
  • Moeini, M., Tabatabaei Shafiei, M. S., Kakkar, A., Lesage, F., « Capillary substrate of brain tissue oxygenation changes with age », April 2016.
Jean-Marc Lina

Book chapters:
  • Jolicoeur, P., Dell’Acqua, R., Brisson, B., Robitaille, N., Sauvé, K., Prime, D., Grimault, S., Marois, R., Sessa, P., Grova, C., Lina, J.-M., Dubarry, A.-S., Leblanc, É., « Visual spatial attention and visual short-term memory: Electromagnetic explorations of mind », in Tutorials in Visual Cognition, V. Coltheart, eds., Macquarie Monographs in Cognitive Science, Hove, Psychology Press, 2010.
Peer-reviewed journal articles:
  • Chowdhury, R. A., Merlet, I., Birot, G., Kobayashi, E., Biraben, A., Wendling, F., Lina, J.-M., Albera, L., Grova, C., Nica, A., « Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data », NeuroImage, 143 (December 2016), 175–195.
  • Roehri, N., Lina, J.-M., Mosher, J. C., Bartolomei, F., Bénar, C.-G., « Time-frequency strategies for increasing high-frequency oscillation detectability in intracerebral EEG », IEEE Transactions on Biomedical Engineering, 63:12 (December 2016), 2595–2606.
  • Pellegrino, G., Hedrich, T., Chowdhury, R. A., Hall, J. A., Lina, J.-M., Dubeau, F., Kobayashi, E., Grova, C., « Source localization of the seizure onset zone from ictal EEG/MEG data », Human Brain Mapping, 37:7 (July 2016), 2528–2546.
  • Lee, K., Lina, J.-M., Gotman, J., Grova, C., « SPARK: Sparsity-based analysis of reliable $k$-hubness and overlapping network structure in brain functional connectivity », NeuroImage, 134 (July 2016), 434–449.
  • Gauvin, M., Chakor, H., Koenekoop, R. K., Little, J. M., Lina, J.-M., Lachapelle, P., « Erratum to: Witnessing the first sign of retinitis pigmentosa onset in the allegedly normal eye of a case of unilateral RP: a 30-year follow-up », Documenta Ophthalmologica, 132:3 (June 2016), 231.
  • Gauvin, M., Chakor, H., Koenekoop, R. K., Little, J. M., Lina, J.-M., Lachapelle, P., « Witnessing the first sign of retinitis pigmentosa onset in the allegedly normal eye of a case of unilateral RP: a 30-year follow-up », Documenta Ophthalmologica, 132:3 (June 2016), 213–229.
  • Lafontaine, M.-P., Lacourse, K., Lina, J.-M., McIntosh, A. R., Gosselin, F., Théoret, H., Lippé, S., « Brain signal complexity rises with repetition suppression in visual learning », Neuroscience, 326 (June 2016), 1–9.
  • Grova, C., Aiguabella, M., Zelmann, R., Lina, J.-M., Hall, J. A., Kobayashi, E., « Intracranial EEG potentials estimated from MEG sources: A new approach to correlate MEG and iEEG data in epilepsy », Human Brain Mapping, 37:5 (May 2016), 1661–1683.
  • von Ellenrieder, N., Pellegrino, G., Hedrich, T., Gotman, J., Lina, J.-M., Grova, C., Kobayashi, E., « Detection and magnetic source imaging of fast oscillations (40–160 Hz) recorded with magnetoencephalography in focal epilepsy patients », Brain Topography, 29:2 (March 2016), 218–231.
  • Gadhoumi, K., Lina, J.-M., Mormann, F., Gotman, J., « Seizure prediction for therapeutic devices: A review », Journal of Neuroscience Methods, 260 (February 2016), 270–282.
  • Chowdhury, R. A., Hedrich, T., Dubeau, F., Lina, J.-M., Grova, C., Kobayashi, E., Heers, M., Hall, J. A., « Localization accuracy of distributed inverse solutions for electric and magnetic source imaging of interictal epileptic discharges in patients with focal epilepsy », Brain Topography, 29:1 (January 2016), 162–181.
  • Amiri, M., Lina, J.-M., Pizzo, F., Gotman, J., « High Frequency Oscillations and spikes: Separating real HFOs from false oscillations », Clinical Neurophysiology, 127:1 (January 2016), 187–196.
  • Gauvin, M., Dorfman, A. L., Trang, N., Gauthier, M., Little, J. M., Lina, J.-M., Lachapelle, P., « Assessing the contribution of the oscillatory potentials to the genesis of the photopic ERG with the discrete wavelet transform », BioMed Research International, 2016 (2016), 2790194, 12 p.
  • O'Reilly, C., Godbout, J., Carrier, J., Lina, J.-M., « Combining time-frequency and spatial information for the detection of sleep spindles », Frontiers in Human Neuroscience, 9 (February 2015), Article 9, 14 p.
  • Zerouali, Y., Lina, J.-M., Sekerovic, Z., Godbout, J., Dubé, J., Jolicoeur, P., Carrier, J., « A time-frequency analysisof the dynamics of cortical networks of sleep spindles from MEG-EEG recordings », Frontiers in Neuroscience, 8:310 (October 2014), 13 p.
  • Zelmann, R., Lina, J.-M., Schulze-Bonhage, A., Gotman, J., Jacobs, J., « Scalp EEG is not a blur: It can see high frequency oscillations although their genetators are small », Brain Topography, 27:5 (September 2014), 683–704.
  • Lina, J.-M., Chowdhury, R. A., Lemay, É., Kobayashi, E., Grova, C., « Wavelet-based localization of oscillatory sources from magnetoencephalography data », IEEE Transactions on Biomedical Engineering, 61:8 (August 2014), 2350–2364.
  • Gauvin, M., Lina, J.-M., Lachapelle, P., « Advance in ERG Analysis: From peak time and amplitude to fequency, power, and energy », BioMed Research International, 2014 (July 2014), 246096,11 p.
  • Machado, A., Marcotte, O., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal optode montage on electroencephalography/ functional near-infrared spectroscopy caps dedicated to study epileptic discharges », Journal of Biomedical Optics, 19:2 (February 2014), 026010.
  • Machado, A., Marcotte, O., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal optode montage on electroencephalography/functional near-infrared spectroscopy caps dedicated to study epileptic discharges », Journal of Biomedical Optics, 19:2 (February 2014), 026010.
  • Gadhoumi, K., Lina, J.-M., Gotman, J., « Seizure prediction in patients with mesial temporal lobe epilepsy using EEG measures of state similarity », Clinical Neurophysiology, 124:9 (September 2013), 1745–1754.
  • Zerouali, Y., Lina, J.-M., Jemel, B., « Optimal eye-gaze fixation position for face-related neural responses », PLoS One, 8:6 (June 2013), e60128.
  • Nadon, V., Bockstael, A., Keppler, H., Botteldooren, D., Lina, J.-M., Voix, J., « Use of passive hearing protectors and adaptive noise reduction for field recording of otoacoustic emmissions in industrial noise », The Journal of the Acoustic Society of America, 133:5 (May 2013), 3274.
  • Zerouali, Y., Herry, C. L., Jemel, B., Lina, J.-M., « Localization of synchronous cortical neural sources », IEEE Transactions on Biomedical Engineering, 60:3 (March 2013), 770–780.
  • Chowdhury, R. A., Lina, J.-M., Kobayashi, E., Grova, C., « MEG source localization of spatially extended generators of epileptic activity: comparing entropic and hierarchical bayesian approaches », PLoS One, 8:2 (2013), e55969.
  • Gadhoumi, K., Lina, J.-M., Gotman, J., « Discriminating preictal and interictal states in patients with temporal lobe epilepsy using wavelet analysis of intracerebral EEG », Clinical Neurophysiology, 123:10 (October 2012), 1906–1916.
  • Worrell, G. A., Jerbi, K., Kobayashi, K., Lina, J.-M., Zelmann, R., Le Van Quyen, M., « Recording and analysis techniques for high-frequency oscillations », Progress in Neurobiology, 98:3 (September 2012), 265–278.
  • Lopes, R., Lina, J.-M., Fahoum, F., Gotman, J., « Detection of epileptic activity in fMRI without recording the EEG », NeuroImage, 60:3 (March 2012), 1867–1879.
  • Machado, A., Lina, J.-M., Tremblay, J., Lassonde, M., Nguyen, D. K., Lesage, F., Grova, C., « Detection of hemodynamic responses to epileptic activity using simultaneous Electro-Encephalography (EEG) / Near Infra Red Spectroscopy (NIRS) acquisitions », NeuroImage, 56:1 (May 2011), 114–125.
  • Lina, J.-M., Matteau-Pelletier, C., Dehaes, M., Desjardins, M., Lesage, F., « Wavelet-based estimation of the hemodynamic responses in diffuse optical imaging », Medical Image Analysis, 14:4 (August 2010), 606–616.
Fahima Nekka

Peer-reviewed journal articles:
  • Wu, X., Nekka, F., Li, J., « Steady-state volume of distribution of two-compartment models with simultaneous linear and saturated elimination », Journal of Pharmacokinetics and Pharmacodynamics, 43:4 (August 2016), 447–459.
  • Craig, M., González-Sales, M., Li, J., Nekka, F., « Approaching pharmacometrics as a paleontologist would: Recovering the links between drugs and the body through reconstruction », CPT: Pharmacometrics & Systems Pharmacology, 5:3 (May 2016), 158–160.
  • Craig, M., Humphries, A. R., Nekka, F., Bélair, J., Li, J., Mackey, M. C., « Neutrophil dynamics during concurrent chemotherapy and G-CSF administration: Mathematical modelling guides dose optimisation to minimise neutropenia », Journal of Theoretical Biology, 385 (November 2015), 77–89.
  • Sarem, S., Nekka, F., Ahmed, I. S., Litalien, C., Li, J., « Impact of sampling time deviations on the prediction of the area under the curve using regression limited sampling strategies », Biopharmaceutics & Drug Disposition, 36:7 (October 2015), 417–428.
  • Sarem, S., Nekka, F., Barrière, O., Lapeyraque, A.-L., Duval, M., Teira, P., Bittencourt, H., Haddad, E., Théorêt, Y., Litalien, C., « Limited sampling strategies for estimating intravenous and oral cyclosporine area under the curve in pediatric hematopoietic stem cell transplantation  », Therapeutic Drug Monitoring, 37:2 (April 2015), 198–205.
  • Wu, X., Li, J., Nekka, F., « Closed form solutions and dominant elimination pathways of simultaneous first-order and Michaelis–Menten kinetics », Journal of Pharmacokinetics and Pharmacodynamics, 42:2 (April 2015), 151–161.
  • Sarem, S., Li, J., Barrière, O., Litalien, C., Théorêt, Y., Lapeyraque, A.-L., Nekka, F., « Bayesian approach for the estimation of cyclosporine area under the curve using limited sampling strategies in pediatric hematopoietic stem cell transplantation », Theoretical Biology & Medical Modelling, 11 (September 2014), Article 39, 22 p.
  • Li, J., Nekka, F., « A rational quantitative approach to determine the best dosing regimen for a target therapeutic effect: a unified formalism for antibiotic evaluation  », Journal of Theoretical Biology, 319 (February 2013), 88–95.
  • Barrière, O., Li, J., Nekka, F., « Compliance spectrum as a drug fingerprint of drug intake and drug disposition », Journal of Pharmacokinetics and Pharmacodynamics, 40:1 (February 2013), 41–52.
  • Barrière, O., Li, J., Nekka, F., « A Bayesian approach for the estimation of patient compliance based on the last sampling information », Journal of Pharmacokinetics and Pharmacodynamics, 38:3 (June 2011), 333–351.
  • Sarem, S., Li, J., Nekka, F., « Compliance descriptors: analysis and evaluation in terms of therapeutic effect », Biopharmaceutics & Drug Disposition, 32:2 (March 2011), 76–88.
  • Gohoré Bi, G. D., Fenneteau, F., Barrière, O., Li, J., Nekka, F., « Rational drug delineation: A global sensitivity approach based on therapeutic tolerability to deviations in execution », Pharmacology and Pharmacy, 1:2 (October 2010), 42–52.
  • Fenneteau, F., Poulin, P., Nekka, F., « Physiologically based predictions of the impact of inhibition of intestinal and hepatic metabolism on human pharmacokinetics of CYP3A substrates », Journal of Pharmaceutical Sciences, 99:1 (January 2010), 486–514.
Peer-reviewed conference proceedings:
  • Li, J., Nekka, F., « A spatial and nondegenerative autocorrelation function to reveal the inner similarity structure of irregular sets », in Emerging Applications of Wavelet Methods, 7th International Congress on Industrial and Applied Mathematics-Thematic Minisymposia, Siddiqi, A. H., ed., AIP Conference Proceedings, Melvile, NY, Amer. Inst. Phys., 2012, 39–51.
Home l Members
Postdoctoral fellows l Graduate students
Activities l Publications l Contact us l Links