Recent publications

Recent publications

Recent Publications (since 2012)


Note: the researchers’ personal web page may contain more recent publications.
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    Lab Members

  • Habib Benali (Concordia University)
  • Maxime Descoteaux (Université de Sherbrooke)
  • Christophe Grova (PERFORM Centre – Concordia University)
  • Karim Jerbi (Université de Montréal)
  • Frédéric Lesage (Polytechnique Montréal)
  • Jean-Marc Lina (École de technologie supérieure)
  • Fahima Nekka (Université de Montréal)


  • Habib Benali

    Peer-reviewed journal articles:

    • Laventure, S., Pinsard, B., Lungu, O., Carrier, J., Fogel, S., Benali, H., Lina, J.-M., Boutin, A., Doyon, J., « Beyond spindles: interactions between sleep spindles and boundary frequencies during cued reactivation of motor memory representations », Sleep, 41:9 (septembre 2018), zsy142, 14 p.
    • Gallea, C., Ewenczyk, C., Degos, B., Welter, M.-L., Grabli, D., Leu-Semenescu, S., Valabrègue, R., Berroir, P., Yahia-Cherif, L., Bertasi, É., Fernandez-Vidal, S., Bardinet, É., Roze, E., Benali, H., Poupon, C., François, C., Arnulf, I., Lehéricy, S., Vidailhet, M., « Pedunculopontine network dysfunction in Parkinson’s disease with postural control and sleep disorders », Movement Disorders, 32:5 (mai 2017), 693–704.
    • Gheysen, F., Lasne, G., Pélégrini-Issac, M., Albouy, G., Meunier, S., Benali, H., Doyon, J., Popa, T., « Taking the brakes off the learning curve », Human Brain Mapping, 38:3 (mars 2017), 1676–1691.
    • Ewenczyk, C., Mesmoudi, S., Gallea, C., Welter, M.-L., Gaymard, B., Demain, A., Yahia-Cherif, L., Degos, B., Benali, H., Pouget, P., Poupon, C., Lehéricy, S., Rivaud-Perchoux, S., Vidailhet, M., « Antisaccades in Parkinson disease », Neurology, 88:9 (février 2017), 853–861.
    • Fogel, S., Vien, C., Karni, A., Benali, H., Carrier, J., Doyon, J., « Sleep spindles: a physiological marker of age-related changes in gray matter in brain regions supporting motor skill memory consolidation », Neurobiology of Aging, 49 (janvier 2017), 154–164.
    • Vien, C., Boré, A., Lungu, O., Benali, H., Carrier, J., Fogel, S., Doyon, J., « Age-related white-matter correlates of motor sequence learning and consolidation », Neurobiology of Aging, 48 (décembre 2016), 13–22.
    • Gargouri, F., Messé, A., Perlbarg, V., Valabrègue, R., McColgan, P., Yahia-Cherif, L., Fernandez-Vidal, S., Ben Hamida, A., Benali, H., Tabrizi, S., Durr, A., Lehéricy, S., « Longitudinal changes in functional connectivity of cortico-basal ganglia networks in manifests and premanifest huntington’s disease », Human Brain Mapping, 37:11 (novembre 2016), 4112–4128.
    • Operto, G., Chupin, M., Batrancourt, B., Habert, M.-O., Colliot, O., Benali, H., Poupon, C., Champseix, C., Delmaire, C., Marie, S., Rivière, D., Pélégrini-Issac, M., Perlbarg, V., Trebosson, R., Bottlaender, M., Frouin, V., Grigis, A., Papadopoulos Orfanos, D., Dary, H., Fillon, L., Azouani, C., Bouyahia, A., Fischer, C., Edward, L., Bouin, M., Thoprakarn, U., Li, J., Makkaoui, L., Poret, S., Dufouil, C., Bouteloup, V., Chételat, G., Dubois, B., Lehéricy, S., Mangin, J.-F., Cointepas, Y., « CATI: A large distributed infrastructure for the neuroimaging of cohorts », Neuroinformatics, 14:3 (juillet 2016), 253–264.
    • Sangari, S., Iglesias, C., El Mendili, M.-M., Benali, H., Pradat, P.-F., Marchand-Pauvert, V., « Impairment of sensory-motor integration at spinal level in amyotrophic lateral sclerosis », Clinical Neurophysiology, 127:4 (avril 2016), 1968–1977.
    • Laventure, S., Fogel, S., Lungu, O., Albouy, G., Sévigny-Dupont, P., Vien, C., Sayour, C., Carrier, J., Benali, H., Doyon, J., « NREM2 and sleep spindles are instrumental to the consolidation of motor sequence memories », PLOS Biology, 14:3 (mars 2016), e1002429, 27 p.
    • Dubois, B., Hampel, H., Feldman, H., Scheltens, P., Aisen, P., Andrieu, S., Bakardjian, H., Benali, H., Bertram, L., Blennow, K., Broich, K., Cavedo, E., Crutch, S., Dartigues, J.-F., Duyckaerts, C., Epelbaum, S., Frisoni, G. B., Gauthier, S., Genthon, R., Gouw, A. A., Habert, M.-O., Holtzman, D. M., Kivipelto, M., Lista, S., Molinuevo, J.-L., O’Bryant, S. E., Rabinovici, G. D., Rowe, C., Salloway, S., Schneider, L. S., Sperling, R., Teichmann, M., Carrillo, M. C., Cummings, J., Jack, C. R., « Preclinical Alzheimer’s disease: Definition, natural history, and diagnostic criteria », Alzheimer’s & Dementia, 12:3 (mars 2016), 292–323.
    • Blanchard, S., Saillet, S., Ivanov, A., Benquet, P., Bénar, C.-G., Pélégrini-Issac, M., Benali, H., Wendling, F., « A new computational model for neuro-glio-vascular coupling: Astrocyte activation can explain cerebral blood flow nonlinear response to interictal events », PLoS One, 12:2 (février 2016), e0147292, 21 p.
    • Sockeel, S., Schwartz, D., Pélégrini-Issac, M., Benali, H., « Large-scale functional networks identified from resting-state EEG using spatial ICA », PLoS One, 11:1 (janvier 2016), e0146845, 18 p.
    • El Mendili, M.-M., Lenglet, T., Stojkovic, T., Behin, A., Guimarães-Costa, R., Salachas, F., Meininger, V., Bruneteau, G., Le Forestier, N., Lafôret, P., Lehéricy, S., Benali, H., Pradat, P.-F., « Cervical spinal cord atrophy profile in adult SMN1-linked SMA », PLoS One, 11:4 (2016), e0152439, 12 p.
    • Garnier, A., Vidal, A., Benali, H., « A theoretical study on the role of astrocytic activity in neuronal hyperexcitability by a novel neuron-glia mass model », The Journal of Mathematical Neuroscience, 6 (2016), 10, 30 p.
    • Huneau, C., Benali, H., Chabriat, H., « Investigating human neurovascular coupling using functional neuroimaging: A critical review of dynamic models », Frontiers in Neuroscience, 9 (décembre 2015), 467, 12 p.
    • Samson, F., Zeffiro, T. A., Doyon, J., Benali, H., Mottron, L., « Speech acquisition predicts regions of enhanced cortical response to auditory stimulation in autism spectrum individuals », Journal of Psychiatric Research, 68 (septembre 2015), 285–292.
    • Caroppo, P., Habert, M.-O., Durrleman, S., Funkiewiez, A., Perlbarg, V., Hahn, V., Bertin, H., Gaubert, M., Routier, A., Hannequin, D., Deramecourt, V., Pasquier, F., Rivaud-Perchoux, S., Vercelletto, M., Edouart, G., Valabrègue, R., Lejeune, P., Didic, M., Corvol, J.-C., Benali, H., Lehéricy, S., Dubois, B., Colliot, O., Brice, A., Le Ber, I., « Lateral temporal lobe: An early imaging marker of the presymptomatic GRN disease? », Journal of Alzheimer’s Disease, 47:3 (août 2015), 751–759.
    • Laouchedi, M., Galanaud, D., Delmaire, C., Fernandez-Vidal, S., Messé, A., Mesmoudi, S., Oulebsir Boumghar, F., Pélégrini-Issac, M., Puybasset, L., Benali, H., Perlbarg, V., « Differentation in thalamic and pontine areas in severe traumatic brain injury », Journal of Neuradiology, 42:4 (juillet 2015), 202–211.
    • Vahdat, S., Lungu, O., Cohen-Adad, J., Marchand-Pauvert, V., Benali, H., Doyon, J., « Simultaneous brain-cervical cord fMRI Reveals intrinsic spinal cord plasticity during motor sequence learning », PLOS Biology, 13:6 (juin 2015), e1002186, 25 p.
    • Barbeau, E. B., Lewis, J. A., Doyon, J., Benali, H., Mottron, L., Zeffiro, T. A., « A greater involvement of posterior brain areas in interhemispheric transfer in autism: fMRI, DWI and behavioral evidences », NeuroImage: Clinical, 8 (avril 2015), 267–280.
    • El Mendili, M.-M., Chen, R., Tiret, B., Villard, N., Trunet, S., Pélégrini-Issac, M., Lehéricy, S., Pradat, P.-F., Benali, H., « Fast and accurate semi-automated segmentation method of spinal cord MR images at 3T applied to the construction of a cervical spinal cord template », PLoS One, 10:3 (mars 2015), e0122224, 21 p.
    • Albouy, G., Fogel, S., King, B. R., Laventure, S., Benali, H., Kami, A., Carrier, J., Robertson, E. M., Doyon, J., « Maintaining vs. enhancing motor sequence memories: respective roles of striatal and hippocampal systems », NeuroImage, 108 (mars 2015), 423–434.
    • El Mendili, M.-M., Chen, R., Tiret, B., Pélégrini-Issac, M., Cohen-Adad, J., Lehéricy, S., Pradat, P.-F., Benali, H., « Validation of semiautomated spinal cord segmentation method », Journal of Magnetic Resonance Imaging, 41:2 (février 2015).
    • Garnier, A., Vidal, A., Huneau, C., Benali, H., « A neural mass model with direct and indirect excitatory feedback loops: identification of bifurcations and temporal dynamics », Neural Computation, 27:2 (février 2015), 329–364.
    • Messé, A., Benali, H., Marrelec, G., « Relating structural and functional connectivity in MRI: a simple model for a complex brain », IEEE Transactions on Medical Imaging, 34:1 (janvier 2015), 27–37.
    • Iglesias, C., Sangari, S., El Mendili, M.-M., Benali, H., Marchand-Pauvert, V., Pradat, P.-F., « Electrophysiological and spinal imaging evidences for sensory dysfunction in amyotrophic lateral sclerosis », BMJ Open, 5 (2015), e007659, 10 p.
    • Hinson, H. E., Puybasset, L., Weiss, N., Perlbarg, V., Benali, H., Galanaud, D., Lasarev, M., Stevens, R. D., « Neuroanatomical basis of paroxysmal sympathetic hyperactivity: A diffusion tensor imaging analysis », Brain Injury, 29:4 (2015), 455–461.
    • Gallea, C., Balas, M., Bertasi, É., Valabrègue, R., García-Lorenzo, D., Coynel, D., Bonnet, C., Grabli, D., Pélégrini-Issac, M., Doyon, J., Benali, H., Roze, E., Vidailhet, M., Lehéricy, S., « Increased cortico-striatal connectivity during motor practice contributes to the consolidation of motor memory in writer’s cramp patients », NeuroImage: Clinical, 8 (2015), 180–192.
    • Fonov, V. S., Le Troter, A., Taso, M., De Leener, B., Lévêque, G., Benhamou, M., Sdika, M., Benali, H., Pradat, P.-F., Collins, D. L., Callot, V., Cohen-Adad, J., « Framework for integrated MRI average of the spinal cord white and gray matter: The MNI–Poly–AMU template », NeuroImage, 102 (novembre 2014), 817–827.
    • Toussaint, P.-J., Maiz, S., Coynel, D., Doyon, J., Messé, A., Cruz de Souza, L., Sarazin, M., Perlbarg, V., Habert, M.-O., Benali, H., « Characteristics of the default mode functional connectivity in normal ageing and Alzheimer’s disease using resting state fMRI with a combined approach of entropy-based and graph theoretical measurements », NeuroImage, 101 (novembre 2014), 778–786.
    • Debas, K., Carrier, J., Barakat, M., Marrelec, G., Bellec, P., Hadj Tahar, A., Kami, A., Ungerleider, L. G., Benali, H., Doyon, J., « Off-line consolidation of motor sequence learning results in greater integration within a cortico-striatal functional network », NeuroImage, 99 (octobre 2014), 50–58.
    • Marsolais, Y., Perlbarg, V., Benali, H., Joanette, Y., « Age-related changes in functional network connectivity associated with high levels of verbal fluency performance », Cortex, 58 (septembre 2014), 123–138.
    • Louapre, C., Perlbarg, V., García-Lorenzo, D., Urbanski, M., Benali, H., Assouad, R., Galanaud, D., Freeman, L., Bodini, B., Papeix, C., Tourbah, A., Lubetski, C., Lehéricy, S., Stankoff, B., « Brain networks disconnection in early multiple sclerosis cognitive deficits: an anatomofunctional study », Human Brain Mapping, 35 (septembre 2014), 4706–4717.
    • Fogel, S., Albouy, G., Vien, C., Popovicci, R., King, B. R., Hoge, R. D., Jbabdi, S., Karni, A., Maquet, P., Carrier, J., Doyon, J., Benali, H., « fMRI and sleep correlates of the age-related impairement in motor memory consolidation », Human Brain Mapping, 35:8 (août 2014), 3625–3645.
    • El Mendili, M.-M., Cohen-Adad, J., Pélégrini-Issac, M., Rossignol, S., Morizot-Koutlidis, R., Marchand-Pauvert, V., Iglesias, C., Sangari, S., Katz, R., Lehéricy, S., Benali, H., Pradat, P.-F., « Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis », PLoS One, 9:4 (avril 2014), e95516, 7 p.
    • Malherbe, C., Messé, A., Bardinet, É., Pélégrini-Issac, M., Perlbarg, V., Marrelec, G., Worbe, Y., Yelnick, J., Lehéricy, S., Benali, H., « Combining spatial independent component analysis with regression to identify the subcortical components of resting-state FMRI functional networks », Brain Connectivity, 4:3 (avril 2014), 181–192.
    • Messé, A., Rudrauf, D., Benali, H., Marrelec, G., « Relating structure and function in the human brain: relative contributions of anatomy, stationary dynamics, and non-stationarities », PLoS Computational Biology, 10:3 (mars 2014), e1003530, 9 p.
    • van der Eerden A. W., Khalilzadeh, O., Perlbarg, V., Dinkel, J., Sanchez, P., Vos, P. E., Luyt, C.-É., Stevens, R. D., Menjot de Champfleur, N., Delmaire, C., Tollard, E., Gupta, R., Dormont, D., Laureys, S., Benali, H., Vanhaudenhuyse, A., Galanaud, D., Puybasset, L., « White matter changes in comatoes survivors of anoxic ischemic encephalopathy and traumatic brain injury: Comparative diffusion-tensor imagining study », Radiology, 270:2 (février 2014), 506–516.
    • Poulin-Lord, M.-P., Barbeau, E. B., Soulièrers, I., Monchi, O., Doyon, J., Benali, H., Mottron, L., « Increased topographical variability of task-related activation in perceptive and motor associative regions in adult autistics », NeuroImage: Clinical, 4 (2014), 444–453.
    • Barakat, M., Carrier, J., Debas, K., Lungu, O., Fogel, S., Vandewalle, G., Hoge, R. D., Bellec, P., Karni, A., Ungerleider, L. G., Benali, H., Doyon, J., « Sleep spindles predict neural and behavioral changes in motor sequence consolidation », Human Brain Mapping, 34:11 (novembre 2013), 2918–2928.
    • Rosso, C., Valabrègue, R., Attal, Y., Vargas, P., Gaudron, M., Baronnet, F., Bertasi, E., Humbert, F., Peskine, A., Perlbarg, V., Benali, H., Lehéricy, S., Samson, Y., « Contribution of corticospinal tract and functional connectivity in hand motor impairement after stoke », PLoS One, 8:9 (septembre 2013), e73164, 11 p.
    • Garcia-Lorenzo, D., Longo-Dos Santos, C., Ewenczyk, C., Leu-Semenescu, S., Gallea, C., Quattrocchi, G., Pita Lobo, P., Poupon, C., Benali, H., Arnulf, I., Vidailhet, M., Lehéricy, S., « The coeruleus/subcoeruleus complex in rapid eye movement sleep behaviour disorders in Parkinson’s disease », Brain, 136:7 (juillet 2013), 2120–2129.
    • Mesmoudi, S., Perlbarg, V., Rudrauf, D., Messé, A., Pinsard, B., Hasboun, D., Cioli, C., Marrelec, G., Toro, R., Benali, H., Burnod, Y., « Resting state networks’ corticotopy: The dual intertwined rings architecture », PLoS One, 8:7 (juillet 2013), e67444, 14 p.
    • Messé, A., Caplain, S., Pélégrini-Issac, M., Blancho, S., Lévy, R., Aghakhani, N., Montreuil, M., Benali, H., Lehéricy, S., « Specific an evolving resting-state network alterations in post-concussion syndrome following mild traumatic brain injury », PLoS One, 8:6 (juin 2013), e65470, 10 p.
    • Moutet, F., Delon-Martin, C., Martin, O., Sirigu, A., Delaquaize, F., Benali, H., Masquelet, A.-C., « IRM fonctionnelle. Quels apports en chirurgie de la main ? », Chirurgie de la Main, 32:3 (juin 2013), 121–128.
    • Dehaes, M., Kazemi, K., Pélégrini-Issac, M., Grebe, R., Benali, H., Wallois, F., « Quantitative effect of the neonatal fontanel on synthetic near infrared spectroscopy measurements », Human Brain Mapping, 34:4 (avril 2013), 878–889.
    • Sharman, M. A., Valabrègue, R., Perlbarg, V., Marrakchi-Kacem, L., Vidailhet, M., Benali, H., Brice, A., Lehéricy, S., « Parkinson’s disease patients show reduced cortical-subcortical sensorimotor connectivity », Movement Disorders, 28:4 (avril 2013), 447–454.
    • Cuingnet, R., Glaunès, J. A., Chupin, M., Benali, H., Colliot, O., « Spatial and anatomical regularization of SVM: A general framework for neuroimaging data », IEEE Transactions on Pattern Analysis and Machine Intelligence, 35:3 (mars 2013), 682–696.
    • Taylor, V. A., Daneault, V., Grant, J., Scavone, G., Breton, E., Roffe-Vidal, S., Courtemanche, J., Lavarenne, A., Marrelec, G., Benali, H., Beauregard, M., « Impact of meditation training on the default mode network during a restful state », Social Cognitive and Affective Neuroscience, 8:1 (janvier 2013), 4–14.
    • Cohen-Adad, J., El Mendili, M.-M., Morizot-Koutlidis, R., Lehéricy, S., Meininger, V., Blancho, S., Rossignol, S., Benali, H., Pradat, P.-F., « Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration », Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, 14:1 (janvier 2013), 30–38.
    • Marcotte, K., Perlbarg, V., Marrelec, G., Benali, H., Ansaldo, A. I., « Default-mode network fuctional connectivity in aphasia: therapy-induced neuroplasticity  », Brain and Language, 124:1 (janvier 2013), 45–55.
    • Ghazi Saidi, L., Perlbarg, V., Marrelec, G., Pélégrini-Issac, M., Benali, H., Ansaldo, A. I., « Functional connectivity changes in second language vocabulary learning », Brain and Language, 124:1 (janvier 2013), 56–65.
    • Luyt, C.-E., Galanaud, D., Perlbarg, V., Vanhaudenhuyse, A., Stevens, R., Gupta, R., Besancenot, H., Krainik, A., Audibet, G., Combes, A., Chastre, J., Benali, H., Laureys, S., Puybasset, L., « Diffusion tensor imaging to predict long-term outcome after cardiac arrest: A bicentric pilot study », Anesthesiology, 117:6 (décembre 2012), 1311–1321.
    • Galanaud, D., Perlbarg, V., Gupta, R., Stevens, R., Sanchez, P., Tollard, E., de Champfleur, N. M., Dinkel, J., Faivre, S., Soto Ares, G., Veber, B., Cottenceau, V., Masson, F., Tourdias, T., André, E., Audibert, G., Schmitt, E., Ibarrola, D., Dailler, F., Vanhaudenhuyse, A., Tshibanda, L., Payen, J.-F., Le Bas, J.-F., Krainik, A., Bruder, N., Girard, N., Laureys, S., Benali, H., Puybasset, L., « Assement of white matter injury and outcome in severe brain traume: a prospective multicenter cohort », Anesthesiology, 117:6 (décembre 2012), 1300–1310.
    • Toussaint, P.-J., Perlbarg, V., Bellec, P., Desarnaud, S., Lacomblez, L., Doyon, J., Habert, M.-O., Benali, H., « Resting state FDG-PET functional connectivity as an early biomarker of Alzheimer’s disease using conjoint univariate and independent component anayses », NeuroImage, 63:2 (novembre 2012), 936–946.
    • Xie, G., Piché, M., Khoshnejad, M., Perlbarg, V., Chen, J. I., Hoge, R. D., Benali, H., Rossignol, S., Rainville, P., Cohen-Adad, J., « Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord », NeuroImage, 63:1 (octobre 2012), 245–252.
    • Messé, A., Marrelec, G., Bellec, P., Perlbarg, V., Doyon, J., Pélégrini-Issac, M., Benali, H., « Comparing structural and functional graph theory features in the human brain using multimodal MRI », IRBM, 33:4 (septembre 2012), 244–253.
    • Worbe, Y., Malherbe, C., Hartmann, A., Pélégrini-Issac, M., Messé, A., Vidailhet, M., Lehéricy, S., Benali, H., « Functional immaturity of cortico-basal ganglia networks in Gilles de la Tourette syndrome », Brain, 135:6 (juin 2012), 1937–1946.
    • Messé, A., Caplain, S., Pélégrini-Issac, M., Blancho, S., Montreuil, M., Lévy, R., Lehéricy, S., Benali, H., « Structural integrity and postconcussion syndrome in mild traumatic brain injury patients », Brain Imaging and Behavior, 6:2 (juin 2012), 283–292.
    • Scherer, L. C., Fonseca, R. P., Amiri, M., Adrover-Roig, D., Marcotte, K., Giroux, F., Senhadji, M. N., Benali, H., Lesage, F., Ansaldo, A. I., « Syntactic processing in bilinguals: An fNIRS study », Brain and Language, 121:2 (mai 2012), 144–151.
    • Scherer, L. C., Fonseca, R. P., Giroux, F., Senhadji, M. N., Marcotte, K., Tomitch, L. M. B., Benali, H., Lesage, F., Ska, B., Joanette, Y., « Neurofunctional (re)organization underlying narrative discourse processing in aging: Evidence from fNIRS », Brain and Language, 121:2 (mai 2012), 174–784.
    • Voges, N., Blanchard, S., Wendling, F., David, O., Benali, H., Papadopoulo, T., Clerc, M., Bénar, C., « Modeling of the neurovascular coupling in epileptic discharges », Brain Topography, 25:2 (avril 2012), 136–156.
    • Boly, M., Perlbarg, V., Marrelec, G., Schabus, M., Laureys, S., Doyon, J., Pélégrini-Issac, M., Maquet, P., Benali, H., « Hierarchical clustering of brain activity during human nonrapid eye movement sleep », Proceedings of the National Academy of Sciences of the United States of America, 109:15 (avril 2012), 5856–5861.

    Peer-reviewed conference proceedings:

    • Tsiakaka, O., Terosiet, M., Romain, O., Histace, A., Benali, H., Pradat, P.-F., Vallette, F., Feher, M., Feruglio, S., « In vivo NIRS monitoring in pig spinal cord tissues », in 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (Milan, 2015), IEEE, 2015, 4262–4265.
    • Garnier, A., Huneau, C., Vidal, A., Wendling, F., Benali, H., « Identification of dynamical behaviors in epileptic discharges using a neural mass model with double excitatory feedbacks », in Fourth International Conference on Complex Systems and Applications, 4th International Conference on Complex Systems and Applications (Le Havre, 2014), M. A. Aziz-Alaoui, C. Bertelle, X.Liu, D.Olivier, éd., 2014, 205–210.



    Maxime Descoteaux

    Book chapters:

    • Descoteaux, M., Deriche, R., « From local q-ball estimation to fibre crossing tractography », in Handbook of Biomedical Imaging — Methodologies and Clinical Research, N. Paragios, J. Duncan, N. Ayache, éd., New York, Springer, 2015.
    • Descoteaux, M., Poupon, C., « Diffusion-weighted MRI », in Comprehensive Biomedical Physics. Magnetic Resonance Imaging and Spectroscopy, D. Belki&#263 K. Belki&#263, éd., Vol. 3, Elseiver, 2014.
    • Côté, M.-A., Boré, A., Girard, G., Houde, J.-C., Descoteaux, M., « Tractometer: Online evaluation system for tractography », in Medical Imagine Computing and Computer-Assisted Intervention – MICCAI 2012, Nicholas Ayache, Hervé Delingette, Polina Golland, Kensaku Mori, éd., Lecture Notes in Computer Science, Vol. 7510, Berlin, Springer, 2012. 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part I

    Peer-reviewed journal articles:

    • Lefebvre, J., Castonguay, A., Pouliot, P., Descoteaux, M., Lesage, F., « Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI », Neurophotonics, 4:4 (octobre 2017), 041501, 14&nbsp,p.
    • Lefebvre, J., Castonguay, A., Pouliot, P., Descoteaux, M., Lesage, F., « Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI », Neurophotonics, 4:4 (octobre 2017), 041501, 14 p.
    • De Bendictis, A., Petit, L., Descoteaux, M., Marras, C. E., Barbareschi, M., Corsini, F., Dallabona, M., Chioffi, F., Sarubbo, S., « New insights in the homotopic and heterotopic connectivity of the frontal portion of the human corpus callosum revealed by microdissection and diffusion tractography », Human Brain Mapping, 37:12 (décembre 2016), 4718–4735.
    • Paquette, M., Gilbert, G., Descoteaux, M., « Optimal DSI reconstruction parameter recommendations: Better ODFs and better connectivity », NeuroImage, 142 (novembre 2016), 1–13.
    • St-Jean, S., Coupé, P., Descoteaux, M., « Non local spatial and angular matching: Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising », Medical Image Analysis, 32 (août 2016), 115–130.
    • Daducci, A., Dal Palú, A., Descoteaux, M., Thiran, J.-P., « Microstructure informed tractography: pitfalls and open challenges », Frontiers in Neuroscience, 10 (juin 2016), 247, 13 p.
    • Deslauriers-Gauthier, S., Marziliano, P., Paquette, M., Descoteaux, M., « The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions », Medical Image Analysis, 30 (mai 2016), 46–59.
    • Renauld, E., Descoteaux, M., Bernier, M., Garyfallidis, E., Whittingstall, K., « Semi-automatic segmentation of optic radiations and LGN, and their relationship to EEG alpha waves », PLoS One, 11:7 (2016), e0156436, 21 p.
    • Paquette, M., Merlet, S., Gilbert, G., Deriche, R., Descoteaux, M., « Comparison of sampling strategies and sparsifying transforms to improve compressed sensing diffusion spectrum imaging », Magnetic Resonance in Medicine, 73:1 (janvier 2015), 401–416.
    • Bernier, M., Chamberland, M., Houde, J.-C., Descoteaux, M., Whittingstall, K., « Using fMRI non-local means denoising to uncover activation in sub-cortical structures at 1.5 T for guided HARDI tractography », Frontiers in Human Neuroscience, 8 (septembre 2014), 715, 11 p.
    • Girard, G., Whittingstall, K., Deriche, R., Descoteaux, M., « Towards quantitative connectivity analysis: Reducing tractography biases », NeuroImage, 98:1 (septembre 2014), 266–278.
    • Brandao, P., Jovem, C., Pereira Brasil-Neto, J., Tomaz, C., Descoteaux, M., Allam, N., « Congenital mirror movements: lack of decussation of pyramids  », Brain, 137:8 (août 2014), e292, 4 p.
    • Whittingstall, K., Bernier, M., Houde, J.-C., Fortin, D., Descoteaux, M., « Structural network underlying visuospatial imagery in humans », Cortex, 56 (juillet 2014), 85–98.
    • Vigneau-Roy, N., Bernier, M., Descoteaux, M., Whittingstall, K., « Regional variations in vascular density correlate with resting-state and task-evoked blood oxygen level-dependent signal amplitude », Human Brain Mapping, 35:5 (mai 2014), 1906–1920.
    • Chamberland, M., Whittingstall, K., Fortin, D., Descoteaux, M., Mathieu, D., « Real-time multi-peak tractography for instantaneous connectivity display », Frontiers in Neuroinforamtics, 8:59 (mai 2014), 1–15.
    • Daducci, A., Canales-Rodriguez, E. J., Descoteaux, M., Garyfallidis, E., Gur, Y., Lin, Y.-C., Mani, M., Merlet, S., Paquette, M., Ramirez-Manzanares, A., Reisert, M., Reis Rodrigues, P., Sepehrband, F., Caruyer, E., Choupan, J., Deriche, R., Jacob, M., Menegaz, G., Prckovska, V., Rivera, M., Wiaux, Y., Thiran, J.-P., « Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI  », IEEE Transactions on Medical Imaging, 33:2 (février 2014), 384–399.
    • Garyfallidis, E., Brett, M., Amirbekian, B., Rokem, A., van der Walt, S., Descoteaux, M., Nimmo-Smith, I., et al., « Dipy, a library for the analysis of diffusion MRI data  », Frontiers in Neuroinforamtics, 8:8 (février 2014), 1–17.
    • Gramfort, A., Poupon, C., Descoteaux, M., « Denoising and fast diffusion imaging with physically constrained sparse dictonary learning », Medical Image Analysis, 18:1 (janvier 2014), 36–49.
    • Coupé, P., Manjon, J. V., Chamberland, M., Hiba, B., Descoteaux, M., « Collaborative patch-based super-resolution for diffusion-weighted images », NeuroImage, 83 (décembre 2013), 245–261.
    • Roy, M., Nugent, S., Tremblay, S., Descoteaux, M., Beaudoin, J.-F., Tremblay, L., Lecomte, R., Cunnane, S. C., « A dual tracer PET-MRI protocol for the quantitative measure of regional brain energy substrates uptake in the rat », Journal of visualized experiments, 82 (décembre 2013), e50761, 1–9.
    • Jr. Laforce, R., Roy, M., Descoteaux, M., Berthelot, C., Bouchard, J.-P., « Neurocognitive deficits and diffusion MR imaging abnormalities in a case of adult-onset autosomal dominant leudystrophy », Translational Neuroscience, 4:4 (décembre 2013), 513–515.
    • Côté, M.-A., Girard, G., Boré, A., Garyfallidis, E., Houde, J.-C., Descoteaux, M., « Tractometer: towards validation of tractography pipelines », Medical Image Analysis, 17:7 (octobre 2013), 844–857.
    • Roy, M., Nugent, S., Tremblay, S., Tremblay-Mercier, J., Courchesne-Loyer, A., Beaudoin, J.-F., Tremblay, L., Descoteaux, M., Lecomte, R., Cunnane, S. C., « The ketogenic diet increases brain glucose and ketone uptake in aged rats: a dual tracer PET and volumetric MRI study », Brain Research, 1488 (décembre 2012), 14–23.
    • Fortin, D., Aubin-Lemay, C., Boré, A., Girard, G., Houde, J.-C., Whittingstall, K., Descoteaux, M., « Tractography in the study of the human brain: a neurosurgical perspective », Canadian Journal of Neurological Sciences 39:6 (novembre 2012), 747–756.
    • Descoteaux, M., « De l’estimation locale par imagerie q-ball à la tractographie des croisements de fibres », Technique et science informatiques, 31:3 (2012), 375–396.

    Peer-reviewed conference proceedings:

    • Deslauriers-Gauthier, S., Lina, J.-M., Butler, R., Bernier, P.-M., Whittingstall, K., Deriche, R., Descoteaux, M., « Inference and visualization of information flow in the visual pathway using dMRI and EEG », in Medical Image Computing and Computer Assisted Intervention — MICCAI 2017, 20th International Conference on Medical Image Computing and Computer Assisted Intervention (Québec, QC, 2017), M. Descoteaux, L. Maier-Hein, A. Franz, P. Jannin, D. L. Collins, S. Duchesne, éd., Lecture Notes in Computer Science, Vol. 10433, Cham, Springer, 2017, 505–512.
    • Prckovska, V., Andorrà, M., Villoslada, P., Martinez-Heras, E., Duits, R., Fortin, D., Rodrigues, P., Descoteaux, M., « Contextual diffusion image post-processing aids clinical applications », in Visualization and Processing of Higher Order Descriptors for Multi-Valued Data, I. Hotz, T. Schultz, éd., 5th Dagstuhl Seminar on Visualization and Processing of Higher Order Descriptors for Multi-Valued Data (Dagstuhl, 2014), Cham, Springer, 2015, 353–377.
    • Vaillancourt, O., Chamberland, M., Houde, J.-C., Descoteaux, M., « Visualization of diffusion propagator and multiple parameter diffusion signal », in Visualization and Processing of Higher Order Descriptors for Multi-Valued Data, 5th Dagstuhl Seminar on Visualization and Processing of Higher Order Descriptors for Multi-Valued Data (Dagstuhl, 2014), I.Hotz, T. Schultz, éd., Mathematics and Visualization, Cham, Springer, 2015, 191–212.



    Christophe Grova

    Peer-reviewed journal articles:

    • Machado, A., Cai, Z., Pellegrino, G., Marcotte, O., Vincent, T., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal positioning of optodes on the scalp for personalized functional near-infrared spectroscopy investigations », Journal of Neuroscience Methods, 309 (novembre 2018), 91–108.
    • Chowdhury, R. A., Pellegrino, G., Aydin, U., Lina, J.-M., Dubeau, F., Kobayashi, E., Grova, C., « Reproducibility of EEG-MEG fusion source analysis of interictal spikes: Relevance in presurgical evaluation of epilepsy », Human Brain Mapping, 39:2 (février 2018), 880–901.
    • Pellegrino, G., Hedrich, T., Chowdhury, R. A., Hall, J. A., Dubeau, F., Lina, J.-M., Kobayashi, E., Grova, C., « Clinical yield of magnetoencephalography distributed source imaging in epilepsy: A comparison with equivalent current dipole method », Human Brain Mapping, 39:1 (janvier 2018), 218–231.
    • Lee, K., Khoo, H. M., Lina, J.-M., Dubeau, F., Gotman, J., Grova, C., « Disruption, emergence and lateralization of brain network hubs in mesial temporal lobe epilepsy », NeuroImage: Clinical, 20 (2018), 71–84.
    • Hedrich, T., Pellegrino, G., Kobayashi, E., Lina, J.-M., Grova, C., « Comparison of the spatial resolution of source imaging techniques in high-density EEG and MEG », NeuroImage, 157 (août 2017), 531–544.
    • Chowdhury, R. A., Merlet, I., Birot, G., Kobayashi, E., Biraben, A., Wendling, F., Lina, J.-M., Albera, L., Grova, C., Nica, A., « Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data », NeuroImage, 143 (décembre 2016), 175–195.
    • Chowdhury, R. A., Merlet, I., Birot, G., Kobayashi, E., Biraben, A., Wendling, F., Lina, J.-M., Albera, L., Grova, C., Nica, A., « Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data », NeuroImage, 143 (décembre 2016), 175–195.
    • Maneshi, M., Vahdat, S., Gotman, J., Grova, C., « Validation of shared and specific independent component analysis (SSICA) for between-group comparisons in fMRI », Frontiers in Neuroscience, 10 (septembre 2016), 417, 19 p.
    • Pellegrino, G., Hedrich, T., Chowdhury, R. A., Hall, J. A., Lina, J.-M., Dubeau, F., Kobayashi, E., Grova, C., « Source localization of the seizure onset zone from ictal EEG/MEG data », Human Brain Mapping, 37:7 (juillet 2016), 2528–2546.
    • Lee, K., Lina, J.-M., Gotman, J., Grova, C., « SPARK: Sparsity-based analysis of reliable $k$-hubness and overlapping network structure in brain functional connectivity », NeuroImage, 134 (juillet 2016), 434–449.
    • Grova, C., Aiguabella, M., Zelmann, R., Lina, J.-M., Hall, J. A., Kobayashi, E., « Intracranial EEG potentials estimated from MEG sources: A new approach to correlate MEG and iEEG data in epilepsy », Human Brain Mapping, 37:5 (mai 2016), 1661–1683.
    • Pellegrino, G., Machado, A., von Ellenrieder, N., Watanabe, S., Hall, J. A., Kobayashi, E., Grova, C., « Hemodynamic response to interictal epileptiform discharges addressed by personalized EEG-fNIRS recordings », Frontiers in Neuroscience, 10 (mars 2016), 102, 20 p.
    • von Ellenrieder, N., Pellegrino, G., Hedrich, T., Gotman, J., Lina, J.-M., Grova, C., Kobayashi, E., « Detection and magnetic source imaging of fast oscillations (40–160 Hz) recorded with magnetoencephalography in focal epilepsy patients », Brain Topography, 29:2 (mars 2016), 218–231.
    • Chowdhury, R. A., Hedrich, T., Dubeau, F., Lina, J.-M., Grova, C., Kobayashi, E., Heers, M., Hall, J. A., « Localization accuracy of distributed inverse solutions for electric and magnetic source imaging of interictal epileptic discharges in patients with focal epilepsy », Brain Topography, 29:1 (janvier 2016), 162–181.
    • Heers, M., Chowdhury, R. A., Hedrich, T., Dubeau, F., Hall, J. A., Lina, J.-M., Grova, C., Kobayashi, E., « Localization accuracy of distributed inverse solutions for electric and magnetic source imaging of interictal epileptic discharges in patients with focal epilepsy », Brain Topography, 29:1 (janvier 2016), 162–181.
    • Tohka, J., Bellec, P., Grova, C., Reilhac, A., « Simulation and validation in brain image analysis », Computational Intelligence and Neuroscience, 2016 (2016), 1041058, 2 p.
    • Chowdhury, R. A., Zerouali, Y., Hedrich, T., Heers, M., Kobayashi, E., Lina, J.-M., Grova, C., « MEG-EEG information fusion and electromagnetic source imaging: from theory to clinical application in epilepsy », Brain Topography, 28:6 (novembre 2015), 785–812.
    • Dansereau, C., Bellec, P., Lee, K., Pittau, F., Gotman, J., Grova, C., « Detection of abnormal restong-state networks in individual patients suffering from focal epilepsy », Frontiers in Neurology, 8:419 (décembre 2014), 21 p.
    • Heers, M., Hedrich, T., An, D., Grova, C., Kobayashi, E., « Spatial correlation of hemodynamic changes related to interictal epilectic discharges with electric and magnetic source imaging », Human Brain Mapping, 35:9 (septembre 2014), 4393–4414.
    • Lina, J.-M., Chowdhury, R. A., Lemay, É., Kobayashi, E., Grova, C., « Wavelet-based localization of oscillatory sources from magnetoencephalography data », IEEE Transactions on Biomedical Engineering, 61:8 (août 2014), 2350–2364.
    • Maneshi, M., Vahdat, S., Fahoum, F., Grova, C., Gotman, J., « Specific resting-state brain networks in mesial temporal lobe epilepsy », Frontiers in Neurology, 5:127 (juillet 2014), 8 p.
    • Machado, A., Marcotte, O., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal optode montage on electroencephalography/functional near-infrared spectroscopy caps dedicated to study epileptic discharges », Journal of Biomedical Optics, 19:2 (février 2014), 026010, 16 p.
    • Chowdhury, R. A., Lina, J.-M., Kobayashi, E., Grova, C., « MEG source localization of spatially extended generators of epileptic activity: comparing entropic and hierarchical bayesian approaches », PLoS One, 8:2 (2013), e55969, 19 p.
    • Vahdat, S., Maneshi, M., Grova, C., Gotman, J., Milner, T. E., « Shared and specific independent components analysis for between-group comparison », Neural Computation, 24:11 (novembre 2012), 3052–3090.
    • Pittau, F., Grova, C., Moeller, F., Dubeau, F., Gotman, J., « Patterns of altered functional connectivity in mesial temporal lobe epilepsy », Epilepsia, 53:6 (juin 2012), 1013–1023.
    • Maneshi, M., Moeller, F., Fahoum, F., Gotman, J., Grova, C., « Resting-state connectivity of the sustained attention network correlates with disease duration in idiopathic generalized epilepsy  », PLoS One, 7:12 (2012), e50359.



    Karim Jerbi

    Peer-reviewed journal articles:

    • Breton, A., Ligneul, R., Jerbi, K., George, N., Baudouin, J.-Y., Van der Henst, J.-B., « How occupational status influences the processing of faces: an EEG study », Neuropsychologia (XXXX), accepté.
    • Knoth, I. S., Lajnef, T., Rigoulot, S., Lacourse, K., Vannasing, P., Michaud, J. L., Jacquemont, S., Major, P., Jerbi, K., Lippé, S., « Auditory repetition suppression alterations in relation to cognitive functioning in fragile X syndrome: a combined EEG and machine learning approach », Journal of Neurodevelopmental Disorders, 10:1 (décembre 2018), 4, 13 p.
    • Ossadtchi, A., Altukhov, D., Jerbi, K., « Phase shift invariant imaging of coherent sources (PSIICOS) from MEG data », NeuroImage, 183 (décembre 2018), 950–971.
    • Thiery, T., Lajnef, T., Combrisson, É., Dehgan, A., Rainville, P., Mashour, G. A., Blain-Moraes, S., Jerbi, K., « Long-range temporal correlations in the brain distinguish conscious wakefulness from induced unconsciousness », NeuroImage, 179 (octobre 2018), 30–39.
    • Palva, J. M., Wang, S. H., Palva, S., Zhigalov, A., Monto, S., Brookes, M. J., Schoffelen, J.-M., Jerbi, K., « Ghost interactions in MEG/EEG source space: A note of caution on inter-areal coupling measures », NeuroImage, 173 (juin 2018), 632–643.
    • Oswald, V., Zerouali, Y., Boulet-Craig, A., Krajinovic, M., Laverdière, C., Sinnett, D., Jolicoeur, P., Lippé, S., Jerbi, K., Robaey, P., « Spontaneous brain oscillations as neural fingerprints of working memory capacities: A resting-state MEG study », Cortex, 97 (décembre 2017), 109–124.
    • Alamian, G., Hincapié Casas, A. S., Pascarella, A., Thiery, T., Combrisson, É., Saive, A.-L., Martel, V., Althukov, D., Haesebaert, F., Jerbi, K., « Measuring alterations in oscillatory brain networks in schizophrenia with resting-state MEG: State-of-the-art and methodological challenges », Clinical Neurophysiology, 128:9 (septembre 2017), 1719–1736.
    • Combrisson, É., Vallat, R., Eichenlaub, J.-B., O’Reilly, C., Lajnef, T., Guillot, A., Ruby, P., Jerbi, K., « Sleep: An open-source Python software for visualization, analysis, and staging of sleep data », Frontiers in Neuroinforamtics, 11 (septembre 2017), 60, 11 p.
    • Hincapié Casas, A. S., Kujala, J., Mattout, J., Pascarella, A., Daligaut, S., Delpuech, C., Mery, D., Cosmelli, D., Jerbi, K., « The impact of MEG source reconstruction method on source-space connectivity estimation: A comparison between minimum-norm solution and beamforming », NeuroImage, 156 (août 2017), 29–42.
    • Boulet-Craig, A., Robaey, P., Lacourse, K., Jerbi, K., Oswald, V., Krajinovic, M., Laverdière, C., Sinnett, D., Jolicoeur, P., Lippé, S., « Visual short term memory related brain activity predicts mathematical abilities », Neuropsychology, 31:5 (juillet 2017), 535-545.
    • Rigoulot, S., Knoth, I. S., Lafontaine, M.-P., Vannasing, P., Major, P., Jacquemont, S., Michaud, J. L., Jerbi, K., Lippé, S., « Altered visual repetition suppression in Fragile X Syndrome: New evidence from ERPs and oscillatory activity », International Journal of Developmental Neuroscience, 59 (juin 2017), 52–59.
    • Lajnef, T., O’Reilly, C., Combrisson, É., Chaibi, S., Eichenlaub, J.-B., Ruby, P., Aguera, P.-E., Samet, M., Kachouri, A., Frenette, S., Carrier, J., Jerbi, K., « Meet Spinky: An open-source spindle and K-complex detection toolbox validated on the open-access Montreal Archive of Sleep Studies (MASS) », Frontiers in Neuroinforamtics, 11 (mars 2017), 15, 13 p.
    • Vallat, R., Lajnef, T., Eichenlaub, J.-B., Berthomier, C., Jerbi, K., Morlet, D., Ruby, P., « Increased evoked potentials to arousing auditory stimuli during sleep: Implication for the understanding of dream recall », Frontiers in Human Neuroscience, 11 (mars 2017), 132, 12 p.
    • Alamian, G., Hincapié Casas, A. S., Combrisson, É., Thiery, T., Martel, V., Althukov, D., Jerbi, K., « Alterations of intrinsic brain connectivity patterns in depression and bipolar disorders: A critical assessment of magnetoencephalography-based evidence », Frontiers in Psychiatry, 8 (mars 2017), 41, 17 p.
    • Bastin, J., Deman, P., David, O., Gueguen, M., Benis, D., Minotti, L., Hoffmann, D., Combrisson, É., Kujala, J., Perrone-Bertolotti, M., Kahane, P., Lachaux, J.-P., Jerbi, K., « Direct recordings from human anterior insula reveal its leading role within the error-monitoring network », Cerebral Cortex, 27:2 (février 2017), 1545–1557.
    • Combrisson, É., Perrone-Bertolotti, M., Soto, J. L. P., Alamian, G., Kahane, P., Lachaux, J.-P., Guillot, A., Jerbi, K., « From intentions to actions: Neural oscillations encode motor processes through phase, amplitude and phase-amplitude coupling », NeuroImage, 147 (février 2017), 473–487.
    • Soto, J. L. P., Lachaux, J.-P., Baillet, S., Jerbi, K., « A multivariate method for estimating cross-frequency neuronal interactions and correcting linear mixing in MEG data, using canonical correlations », Journal of Neuroscience Methods, 271 (septembre 2016), 169–181.
    • Soto, J. L. P., Lachaux, J.-P., Baillet, S., Jerbi, K., « A multivariate method for estimating cross-frequency neuronal interactions and correcting linear mixing in MEG data, using canonical correlations », Journal of Neuroscience Methods, 271 (septembre 2016), 169–181.
    • Foster, B. L., He, B. J., Honey, C. J., Jerbi, K., Maier, A., Saalmann, Y. B., « Spontaneous neural dynamics and multi-scale network organization », Frontiers in Systems Neuroscience, 10 (février 2016), 7, 20 p.
    • Thiery, T., Lajnef, T., Jerbi, K., Arguin, M., Aubin, M., « Decoding the locus of covert visuospatial attention from EEG signals », PLoS One, 11:8 (2016), e0160304, 17 p.
    • Kujala, J., Jung, J., Bouvard, S., Lecaignard, F., Lothe, A., Bouet, R., Ciumas, C., Ryvlin, P., Jerbi, K., « Gamma oscillations in V1 are correlated with $\mathrm{GABA}_{\mathrm{A}}$ receptor density: A multi-modal MEG and Flumazenil-PET study », Scientific Reports, 5 (novembre 2015), 16347, 12 p.
    • Lajnef, T., Chaibi, S., Ruby, P., Aguera, P.-E., Eichenlaub, J.-B., Kachouri, A., Jerbi, K., Samet, M., « Learning machines and sleeping brains: Automatic sleep stage classification using decision-tree multi-class support vector machines », Journal of Neuroscience Methods, 250 (juillet 2015), 94-105.
    • Combrisson, É., Jerbi, K., « Exceeding chance level by chance: The caveat of theoretical chance levels in brain signal classification and statistical assessment of decoding accuracy », Journal of Neuroscience Methods, 250 (juillet 2015), 126–136.
    • Lajnef, T., Chaibi, S., Eichinger, B., Ruby, P., Aguera, P.-E., Samet, M., Kachouri, A., Jerbi, K., « Sleep spindle and K-complex detection using tunable Q-factor wavelet transform and morphological component analysis », Frontiers in Human Neuroscience, 9 (juillet 2015), 414, 17 p.
    • Vidal, J. R., Perrone-Bertolotti, M., Levy, J., De Palma, L., Minotti, L., Kahane, P., Bertrand, O., Lutz, A., Jerbi, K., Lachaux, J.-P., « Neural repetition suppression in ventral occipito-temporal cortex occurs during conscious and unconscious processing of frequent stimuli », NeuroImage, 95 (juillet 2014), 129–135.
    • Hamamé, C. R., Vidal, J. R., Perrone-Bertolotti, M., Ossandon, T., Jerbi, K., Kahane, P., Bertrand, O., Lachaux, J.-P., « Functional selectivity in the human occipitotemporal cortex during natural vision: evidence from combined intracranial EEG and eye-tracking », NeuroImage, 95 (juillet 2014), 276–286.
    • Breton, A., Jerbi, K., Henaff, M.-A., Cheylus, A., Baudouin, J.-Y., Schmitz, C., Krolak-Salmon, P., Van der Henst, J.-B., « Face the hierarchy: ERP and oscillatory brain responses in social rank processing », PLoS One, 9:3 (mars 2014), e91451.
    • Korczyn, A. D., Schachter, S. C., Brodie, M. J., Dalal, S., Engel Jr., J., Guekht, A., Hecimovic, H., Jerbi, K., Kanner, A. M., Johannessen Landmark, C., Mares, P., Murisic, P., Meletti, S., Mula, M., Patsalos, P. N., Reuber, M., Ryvlin, P., Stillova, K., Tuchman, R., Rektor, I., « Epilepsy, cognition, and neuropsychiatry (Epilepsy, Brain, and Mind, part 2) », Epilepsy & Behavior, 28:2 (août 2013), 283–302.
    • Dalal, S., Osipova, D., Bertrand, O., Jerbi, K., « Oscillatory activity of the human cerebellum: the intracranial electrocerebellogram revisited », Neuroscience & Biobehavioral Reviews, 37:4 (mai 2013), 585–593.
    • Gross, J., Baillet, S., Barnes, G., Henson, R. N., Hillebrand, A., Jensen, O., Jerbi, K., Litvak, V., Maess, B., Oostenveld, R., Parkkonen, L., Taylor, J. R., van Wassenhove, V., Wibral, M., Schoffelen, J.-M., « Good practice for conducting and reporting MEG research  », NeuroImage, 65 (janvier 2013), 349–363.
    • Perrone-Bertolotti, M., Kujala, J., Vidal, J. R., Hamamé, C. R., Ossandon, T., Bertrand, O., Minotti, L., Kahane, P., Jerbi, K., Lachaux, J.-P., « How silent is silent reading? Intracerebral evidence for top-down activation of temporal voice areas during reading », The Journal of Neuroscience, 32:49 (décembre 2012), 17554–17562.
    • Bastin, J., Lebranchu, P., Jerbi, K., Kahane, P., Orban, G., Lachaux, J.-P., Berthoz, A., « Direct recording in human cortex reveal the dynamics of gamma-band [50-150 Hz] activity during pursuit eye movement control », NeuroImage, 63:1 (octobre 2012), 339–347.
    • Worrell, G. A., Jerbi, K., Kobayashi, K., Lina, J.-M., Zelmann, R., Le Van Quyen, M., « Recording and analysis techniques for high-frequency oscillations », Progress in Neurobiology, 98:3 (septembre 2012), 265–278.
    • Vidal, J. R., Freyermuth, S., Jerbi, K., Hamamé, C. R., Ossandon, T., Bertrand, O., Minotti, L., Kahane, P., Berthoz, A., Lachaux, J.-P., « Long-distance amplitude correlations in the high gamma band reveal segregation and integration within the reading network », The Journal of Neuroscience, 32:19 (mai 2012), 6421–6434.
    • Ossandon, T., Vidal, J. R., Ciumas, C., Jerbi, K., Hamamé, C. R., Dalal, S., Bertrand, O., Minotti, L., Kahane, P., Lachaux, J.-P., « Efficient “pop-out” visual search elicits broadband gamma activity in the dorsal attention network », The Journal of Neuroscience, 32:10 (mars 2012), 3414–3421.
    • Hamamé, C. R., Vidal, J. R., Ossandon, T., Jerbi, K., Dalal, S., Bertrand, O., Kahane, P., Lachaux, J.-P., Minotti, L., « Reading the mind’s eye: online detection of visuo-spatial working memory and visual imagery in the inferior temporal lobe », NeuroImage, 59:1 (janvier 2012), 872–879.

    Peer-reviewed conference proceedings:

    • Soto, J. L. P., Jerbi, K., « Detection of condition-based changes in cross-frequency coupling with MEG », in 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on Biomedical Imaging (Brooklun, 2015), IEEE, 2015, 355-358.
    • Chaibi, S., Lajnef, T., Samet, M., Jerbi, K., Kachouri, A., « Detection of High Frequency Oscillations (HFOs) in the 80––500 Hz range in epilepsy recordings using decision tree analysis », in International Image Processing, Applications and Systems Conference, International Image Processing, Applications and Systems Conference, IEEE, 2014, 1-6.
    • Chaibi, S., Bouet, R., Jung, J., Lajnef, T., Samet, M., Bertrand, O., Kachouri, A., Jerbi, K., « Developement of Matlab-based Graphical User Interface (GUI) for detection of high frequency oscillations (HFOs) in epileptic patients », in 2012 IEEE International Conference on Emerging Signal Processing Applications, 2012 IEEE International Conference on Emerging Signal Processing Applications, Piscataway, NJ, IEEE, 2012, 56-62.
    • Soto, J. L. P., Jerbi, K., « Investigation of cross-frequency phase-amplitude coupling in visuomotor networks using magnetoencephalography », in 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society (San Diego, CA, 2012), IEEE, 2012, 1550-1553.



    Frédéric Lesage

    Book chapters:

    • Castonguay, A., Thomas, S., Lesage, F., Casanova, C., « Optogenetic tools for confined stimulation in deep brain structures », in Optogenetics, A. Kianianmomeni, éd., Methods in Molecular Biology, Vol. 1408, New York, Springer, 2016.
    • Castonguay, A., Thomas, S., Lesage, F., Casanova, C., « Optogenetic tools for confined stimulation in deep brain structures », in Optogenetics: Methods and Protocols, A. Kianianmomeni, éd., Methods in Molecular Biology, Vol. 1408, New York, Humana Press, 2016.
    • Bélanger, S., Oliveira Ferreira de Souza, B., Pouliot, P., Casanova, C., Lesage, F., « Neurovascular coupling in the deep brain using confocal fiber-optic endomicroscopy », in Neurovascular Coupling Methods, M. Zhao
      , H. Ma, T. H. Schwartz, éd., Neuromethods, Vol. 88, New York, Humana Press, 2014.
    • Lesage, F., Sawan, M., Kamrani, E., « Near-infrared light detection using CMOS silicon avalanche photodiodes (SiAPDs) », in The Wonder of Nanotechnology: Quantum Optoelectronic Devices and Applications, L. Esaki, K. von Klitzing, M. Razeghi, éd., Bellingham, WA, SPIE Press, 2013.

    Peer-reviewed journal articles:

    • Zhang, C., Tabatabaei Shafiei, M. S., Bélanger, S., Girouard, H., Moeini, M., Lu, X., Lesage, F., « Astrocytic endfoot $\mathrm{Ca}^{2+}$ correlates with parenchymal vessel responses during 4-AP induced epilepsy: An in vivo two-photon lifetime microscopy study », Journal of Cerebral Blood Flow & Metabolism (XXXX).
    • Saha, S., Lu, Y., Weyers, S., Sawan, M., Lesage, F., « Compact fast optode-based probe for single-photon counting applications », IEEE Photonics Technology Letters, 30:17 (septembre 2018), 1515–1518.
    • Delafontaine-Martel, P., Lefebvre, J., Tardif, P.-L., Lévy, B. I., Pouliot, P., Lesage, F., « Whole brain vascular imaging in a mouse model of Alzheimer’s disease with two-photon microscopy », Journal of Biomedical Optics, 23:7 (juillet 2018), 076501, 10 p.
    • Lopez Rios, N., Pouliot, P., Papoutsis, K., Foias, A., Stikov, N., Lesage, F., Dehaes, M., Cohen-Adad, J., « Design and construction of an optimized transmit/receive hybrid birdcage resonator to improve full body images of medium-sized animals in 7T scanner. », PLoS One, 13:2 (février 2018), e0192035, 14 p.
    • Castonguay, A., Lefebvre, J., Pouliot, P., Lesage, F., « Comparing three-dimensional serial optical coherence tomography histology to MRI imaging in the entire mouse brain », Journal of Biomedical Optics, 23:1 (janvier 2018), 016008, 9 p.
    • Kassab, A., Le Lan, J., Tremblay, J., Vannasing, P., Dehbozorgi, M., Pouliot, P., Gallagher, A., Lesage, F., Sawan, M., Nguyen, D. K., « Multichannel wearable fNIRS-EEG system for long-term clinical monitoring », Human Brain Mapping, 39:1 (janvier 2018), 7–23.
    • Alameh, M., Lavertu, M., Tran-Khanh, N., Chang, C.-Y., Lesage, F., Bail, M., Darras, V., Chevrier, A., Buschmann, M., « siRNA delivery with chitosan: Influence of chitosan molecular weight, degree of deacetylation, and amine to phosphate ratio on in vitro silencing efficiency, hemocompatibility, biodistribution, and in vivo efficacy », Biomacromolecules, 19:1 (janvier 2018), 112–131.
    • Moeini, M., Lu, X., Avti, P. K., Damseh, R., Bélanger, S., Picard, F., Boas, D. A., Kakkar, A., Lesage, F., « Compromised microvascular oxygen delivery increases brain tissue vulnerability with age », Scientific Reports, 8:1 (2018), 8219, 17 p.
    • Castonguay, A., Lefebvre, J., Pouliot, P., Avti, P. K., Moeini, M., Lesage, F., « Serial optical coherence scanning reveals an association between cardiac function and the heart architecture in the aging rodent heart », Biomedical Optics Express, 8:11 (novembre 2017), 5027–5038.
    • Lefebvre, J., Castonguay, A., Pouliot, P., Descoteaux, M., Lesage, F., « Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI », Neurophotonics, 4:4 (octobre 2017), 041501, 14&nbsp,p.
    • Lefebvre, J., Castonguay, A., Pouliot, P., Descoteaux, M., Lesage, F., « Whole mouse brain imaging using optical coherence tomography: reconstruction, normalization, segmentation, and comparison with diffusion MRI », Neurophotonics, 4:4 (octobre 2017), 041501, 14 p.
    • Naderian, A., Bussières, L., Thomas, S., Lesage, F., Casanova, C., « Cellular origin of intrinsic optical signals in the rabbit retina », Vision Research, 137 (août 2017), 40–49.
    • Guevara Codina, E., Pierre, W. C., Tessier, C., Akakpo, L., Londono, I., Lesage, F., Lodygensky, G. A., « Altered functional connectivity following an inflammatory white matter injury in the newborn rat: A high spatial and temporal resolution intrinsic optical imaging study », Frontiers in Neuroscience, 11 (juillet 2017), 358, 11 p.
    • Pouliot, P., Gagnon, L., Lam, T., Bowen Chris., Kakkar, A., Sakadzic, S., Lesage, F., Avti, P. K., Desjardins, M., Thorin, É., Boas, D. A., « Magnetic resonance fingerprinting based on realistic vasculature in mice », NeuroImage, 149 (avril 2017), 436–445.
    • Maafi, F., Li, B., Gebhard, C., Brodeur, M. R., Nachar, W., Villeneuve, L., Lesage, F., Rhainds, D., Rhéaume, É., Tardif, J.-C., « Development of a new bioactivatable fluorescent probe for quantification of apolipoprotein A-I proteolytic degradation in vitro and in vivo », Atherosclerosis, 258 (mars 2017), 8–19.
    • Zhang, C., Moeini, M., Lesage, F., « Spatial landscape of oxygen in and around microvasculature during epileptic events », Neurophotonics, 4:1 (janvier 2017), 010501, 4 p.
    • Guevara Codina, E., Gutiérrez-Hernandez, J. M., Castonguay, A., Lesage, F., Moncada, B., Gonzalez, F. J., « Morphological and molecular imaging of skin samples », Biomedial Research, 28:4 (2017), 1664–1669.
    • Raignault, A., Bolduc, V., Lesage, F., Thorin, É., « Pulse pressure-dependent cerebrovascular eNOS regulation in mice », Journal of Cerebral Blood Flow & Metabolism, 37:2 (2017), 413–424.
    • Tardif, P.-L., Bertrand, M.-J., Abran, M., Castonguay, A., Lefebvre, J., Stähli, B. E., Merlet, N., Mihalache-Avram, T., Geoffroy, P., Mecteau, M., Busseui, D., Ni, F., Abulrob, A., Rhéaume, É., L’Allier, P., Tardif, J.-C., Lesage, F., « Validating intravascular imaging with serial optical coherence tomography and confocal fluorescence microscopy », International Journal of Molecular Sciences, 17:12 (décembre 2016), 2110, 12&npsp;p.
    • Grasland-Mongrain, P., Lu, Y., Lesage, F., Catheline, S., Cloutier, G., « Generation of shear waves by laser in soft media in the ablative and thermoelastic regimes », Applied Physics Letters, 109:22 (novembre 2016), 221901, 5 p.
    • Auger, H., Bherer, L., Boucher, É., Hoge, R. D., Lesage, F., Dehaes, M., « Quantification of extra-cerebral and cerebral hemoglobin concentrations during physical exercise using time-domain near infrared spectroscopy », Biomedical Optics Express, 7:10 (octobre 2016), 3826–3842.
    • Fraser, S. A., Dupuy, O., Pouliot, P., Lesage, F., Bherer, L., « Comparable cerebral oxygenation patterns in younger and older adults during dual-task walking with increasing load », Frontiers in Aging Neuroscience, 8 (octobre 2016), 240, 9 p.
    • Pichette, J., Laurence, A., Angulo, L., Lesage, F., Bouthillier, A., Nguyen, D. K., Leblond, F., « Intraoperative video-rate hemodynamic response assessment in human cortex using snapshot hyperspectral optical imaging », Neurophotonics, 3:4 (octobre 2016), 045003, 9 p.
    • Gagnon, L., Sakadzic, S., Lesage, F., Pouliot, P., Dale, A., Devor, A., Buxton, R. B., Boas, D. A., « Validation and optimization of hypercapnic-calibrated fMRI from oxygen-sensitive two-photon microscopy », Philosophical Transactions of the Royal Society B. Biological Sciences, 371:1705 (octobre 2016), 20150359, 13 p.
    • Auger, H., Bherer, L., Boucher, É., Hoge, R. D., Lesage, F., Dehaes, M., « Quantification of extra-cerebral and cerebral hemoglobin concentrations during physical exercise using time-domain near infrared spectroscopy », Biomedical Optics Express, 7:10 (octobre 2016), 3826–3842.
    • Fraser, S. A., Dupuy, O., Pouliot, P., Lesage, F., Bherer, L., « Comparable cerebral oxygenation patterns in younger and older adults during dual-task walking with increasing load », Frontiers in Aging Neuroscience, 8 (octobre 2016), 240, 9 p.
    • Zerouali Boukhal, Y., Pouliot, P., Robert, M., Mohamed, I., Bouthillier, A., Lesage, F., Nguyen, D. K., « Magnetoencephalographic signatures of insular epileptic spikes based on functional connectivity », Human Brain Mapping, 37:9 (septembre 2016), 3250–3261.
    • Li, B., Lee, J., Boas, D. A., Lesage, F., « Contribution of low- and high-flux capillaries to slow hemodynamic fluctuations in the cerebral cortex of mice », Journal of Cerebral Blood Flow & Metabolism, 36:8 (août 2016), 1351–1356.
    • Peng, K., Pouliot, P., Lesage, F., Nguyen, D. K., « Multichannel continuous electroencephalography-functional near-infrared spectroscopy recording of focal seizures and interictal epileptiform discharges in human epilepsy: a review », Neurophotonics, 3:3 (juillet 2016), 031402; 12 p.
    • Lam, T., Avti, P. K., Pouliot, P., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Magnetic resonance imaging/fluorescence dual modality protocol using designed phosphonate ligands coupled to superparamagnetic iron oxide nanoparticles », Journal of Materials Chemestry B, 4:22 (juin 2016), 3969–3981.
    • Lam, T., Avti, P. K., Pouliot, P., Maafi, F., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Fabricating water dispersible superparamagnetic iron oxide nanoparticles for biomedical applications through ligand exchange and direct conjugation », Nanomaterials, 6:6 (juin 2016), 100, 15 p.
    • Desjardins, M., Sylvestre, J.-P., Jafari, R., Kulasekara, S., Rose, K., Trussart, R., Arbour, J. D., Hudson, C., Lesage, F., « Preliminary investigation of multispectral retinal tissue oximetry mapping using a hyperspectral retinal camera », Experimental Eye Research, 146 (mai 2016), 330–340.
    • Bélanger, S., Oliveira Ferreira de Souza, B., Casanova, C., Lesage, F., « Correlation of hemodynamic and fluorescence signals under resting state conditions in mice’s barrel field cortex », Neuroscience Letters, 616 (mars 2016), 177–181.
    • Peng, K., Nguyen, D. K., Vannasing, P., Tremblay, J., Lesage, F., Pouliot, P., « Using patient-specific hemodynamic response function in epileptic spike analysis of human epilepsy: a study based on EEG–fNIRS », NeuroImage, 126 (février 2016), 239–255.
    • Peng, K., Nguyen, D. K., Vannasing, P., Tremblay, J., Lesage, F., Pouliot, P., « Using patient-specific hemodynamic response function in epileptic spike analysis of human epilepsy: a study based on EEG–fNIRS », NeuroImage, 126 (février 2016), 239–255.
    • Lam, T., Avti, P. K., Pouliot, P., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Surface engineering of SPIONs: role of phosphonate ligand multivalency in tailoring their efficacy », Nanotechnology, 27 (2016), 415602, 11 p.
    • Peng, K., Pouliot, P., Lesage, F., Nguyen, D. K., « Multichannel continuous electroencephalography-functional near-infrared spectroscopy recording of focal seizures and interictal epileptiform discharges in human epilepsy: A review », Neurophotonics, 3:3 (2016), 031402, 12 p.
    • Hatef, A., Fortin-Deschênes, S., Boulais, É., Lesage, F., Meunier, M., « Photothermal response of hollow gold nanoshell to laser irradiation: Continuous wave, short and ultrashort pulse », International Journal of Heat and Mass Transfer, 89 (octobre 2015), 866–871.
    • Mekary, S., Fraser, S. A., Bosquet, L., Bonnéry, C., Labelle, V. r., Pouliot, P., Lesage, F., Bherer, L., « The relationship between exercise intensity, cerebral oxygenation and cognitive performance in young adults », European Journal of Applied Physiology, 115:10 (octobre 2015), 2189–2197.
    • Abran, M., Stähli, B. E., Merlet, N., Mihalache-Avram, T., Mecteau, M., Rhéaume, É., Busseui, D., Tardif, J.-C., Lesage, F., « Validating a bimodal intravascular ultrasound (IVUS) and near-infrared fluorescence (NIRF) catheter for atherosclerotic plaque detection in rabbits », Biomedical Optics Express, 6:10 (octobre 2015), 3989–3999.
    • Laguë-Beauvais, M., Fraser, S. A., Desjardins, M., Lesage, F., Bherer, L., « Shedding light on the effect of priority instructions during dual-task performace in younger and older adults: A fNIRS study  », Brain and Cognition, 98 (août 2015), 1–14.
    • Laguë-Beauvais, M., Fraser, S. A., Desjardins-Crépeau, L., Castonguay, N., Desjardins, M., Lesage, F., Bherer, L., « Shedding light on the effect of priority instructions during dual-task performance in younger and older adults: A fNIRS study », Brain and Cognition, 98 (août 2015), 1–14.
    • Zhang, C., Bélanger, S., Pouliot, P., Lesage, F., « Measurement of local partial pressure of oxygen in the brain tissue under normoxia and epilepsy with phosphorescence lifetime microscopy », PLoS One, 10:8 (août 2015), e0135536, 14 p.
    • Kamrani, E., Lesage, F., Sawan, M., « A low-power photon-counter front-end dedicated to NIRS brain imaging », IEEE Sensors Journal 15:7 (juillet 2015), 3724–3733.
    • Bélanger-Nelson, E., Freyburger, M., Beaumont, É., Pouliot, P., Lesage, F., Mongrain, V., « Brain hemodynamic response to somatosensory stimulation in Neurolign-1 knockout mice », Neuroscience, 289 (mars 2015), 242–250.
    • Bédard, M., Avti, P. K., Lam, T., Rouleau, L., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Conjugation of multivalent ligands to gold nanoshells and designing a dual modality imaging probe », Journal of Materials Chemestry B, 3:9 (mars 2015), 1788–1800.
    • Gagnon, L., Sakadzic, S., Lesage, F., Mandeville, E. T., Fang, Q., Yaseen, M. A., Boas, D. A., « Multimodal reconstruction of microvascular-flow distributions using combined two-photon microscopy and Doppler optical coherence tomography », Neurophotonics, 2:1 (mars 2015), 015008, 8 p.
    • Gagnon, L., Sakadzic, S., Lesage, F., Musacchia, J. J., Lefebvre, J., Fang, Q., Yucel, M. A., Evans, K., Mandeville, E. T., Cohen-Adad, J., Polimeni, J., Yaseen, M. A., Lo, E. H., Greve, D., Buxton, R. B., Dale, A., Devor, A., Boas, D. A., « Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe », Journal of Neuroscience, 35:8 (février 2015), 3663–3675.
    • Dupuy, O., Gauthier, C., Fraser, S. A., Desjardins-Crépeau, L., Desjardins, M., Mekary, S., Lesage, F., Hoge, R. D., Pouliot, P., Bherer, L., « Higher levels of cardiovascular fitness are associated with better executive function and prefrontal oxygenation in younger and older women », Frontiers in Human Neuroscience, 9 (février 2015), 66, 12 p.
    • Gauthier, C., Lefort, M., Mekary, S., Desjardins-Crépeau, L., Skimminge, A., Iversen, P., Madjar, C., Desjardins, M., Lesage, F., Garde, E., Frouin, F., Bherer, L., Hoge, R. D., « Hearts and minds: linking vascular rigidity and aerobic fitness with cognitive aging », Neurobiology of Aging, 36:1 (janvier 2015), 301–314.
    • Amiri, M., Pouliot, P., Bonnéry, C., Leclerc, P.-O., Desjardins, M., Lesage, F., Joanette, Y., « An exploration of the effect of hemodynamic changes due to normal aging on the fNIRS response to semantic processing of words », Frontiers in Neurology, 5 (décembre 2014), 249, 11 p.
    • Sakadzic, S., Mandeville, E. T., Gagnon, L., Musacchia, J. J., Yaseen, M. A., Yucel, M. A., Lefebvre, J., Lesage, F., Dale, A., Eikermann-Haerter, K., Ayata, C., Srinivasan, V. J., Lo, E. H., Devor, A., Boas, D. A., « Large arteriolar component of oxygen delivery implies a safe margin of oxygen supply to cerebral tissue », Nature Communications, 5 (décembre 2014), 5734, 11 p.
    • Abran, M., Cloutier, G., Roy, M.-H., Chayer, B., Tardif, J.-C., Lesage, F., « Development of a photoacoustic, ultrasound and fluorescence imaging catheter for the study of atherosclerotic plaque », IEEE Transactions on Biomedical Circuits and Systems, 8:5 (octobre 2014), 696–703.
    • Desjardins, M., Berti, R., Lefebvre, J., Dubeau, S., Lesage, F., « Aging-related differences in cerebral capillary blood flow in anesthetized rats », Neurobiology of Aging, 35:8 (août 2014), 1947–1955.
    • Li, B., Berti, R., Abran, M., Lesage, F., « Ultrasound guided fluorescence molecular tomography with improved quantification by an attenuation compensated born-normalization and in vivo preclinical study of cancer », Review of Scientific Instruments, 85:5 (mai 2014), 053703, 12 p.
    • Li, B., Maafi, F., Berti, R., Pouliot, P., Lesage, F., « Hybrid FMT-MRI applied to in vivo atherosclerosis imagining  », Biomedical Optics Express, 5:5 (avril 2014), 1664–1676.
    • Castonguay, A., Thomas, S., Lesage, F., Casanova, C., « Repetitive and Retinotopically restricted activation of the Dorsal lateral geniculate nucleus with optogenetics », PLoS One, 9:4 (avril 2014), e94633, 8 p.
    • Peng, K., Nguyen, D. K., Tayah, T., Vannasing, P., Tremblay, J., Sawan, M., Lassonde, M., Lesage, F., Pouliot, P., « fNIRS-EEG study of focal interictal epileptiform discharges », Epilepsy Research, 108:3 (mars 2014), 491–505.
    • Desjardins, M., Berti, R., Pouliot, P., Dubeau, S., Lesage, F., « Multimodal study of the hemodynamic response to hypercapnia in anesthetized aged rats », Neuroscience Letters, 563:4 (mars 2014), 33–37.
    • Lee, J., Jiang, J. Y., Wu, W., Lesage, F., Boas, D. A., « Statistical intensity variation analysis for rapid volumetric imaging of capillary network flux », Biomedical Optics Express, 5:4 (mars 2014), 1160–1172.
    • Beaumont, É., Guevara Codina, E., Dubeau, S., Lesage, F., Nagai, M., Popovic, M., « Functional electrical stimulation post-spinal cord injury improves locomotion and increases afferent input into the central nervous system in rats », The Journal of Spinal Cord Medicine, 37:1 (janvier 2014), 93–100.
    • Kamrani, E., Lesage, F., Sawan, M., « Low-noise, high-gain transimpedance amplifier integrated with SiAPD for low-intensity near-infrared light detection », IEEE Sensors Journal 14:1 (janvier 2014), 258–269.
    • Beaumont, É., Guevara Codina, E., Dubeau, S., Lesage, F., Nagai, M., Popovic, M., « Functional electrical stimulation post-spinal cord injury improves locomotion and increases afferent input into the central nervous system in rats », The Journal of the Spinal Cord Medicine, 37:1 (janvier 2014), 93–100.
    • Spinelli, L., Botwicz, M., Zolek, N., Kacprzak, M., Milej, D., Sawosz, P., Liebert, A., Leclair, S., Bouchard, J.-P., Noiseux, I., Gallant, P., Mermut, O., Pifferi, A., Torricelli, A., Cubeddu, R., Ho, H.-C., Mazurenka, M., Wabnitz, H., Klauenberg, K., Bodnar, O., Elster, C., Bénazech-Lavoué, M., Bérubé-Lauzière, Y., Lesage, F., Di Ninni, P., Martelli, F., Zaccanti, G., « Determination of reference values for optical properties of liquid phantoms based on intralipid and INdia ink », Biomedical Optics Express, 5:7 (2014), 2037–2053.
    • Ng, V. W. K., Avti, P. K., Bédard, M., Lam, T., Rouleau, L., Tardif, J.-C., Rhéaume, É., Lesage, F., Kakkar, A., « Miktoarm star conjugated multifunctional gold nanoshells: synthesis and an evaluation of biocompatibility and cellular uptake », Journal of Materials Chemestry B, 2 (2014), 6334–6344.
    • Li, B., Berti, R., Abran, M., Lesage, F., « Ultrasound guided fluorescence molecular tomography with improved quantification by an attenuaion compensated born-normalization and in vivo preclinical study of cancer », Review of Scientific Instruments, 85:5 (2014), 053703, 12 p.
    • Guevara Codina, E., Berti, R., Londono, I., Xie, N., Bellec, P., Lesage, F., Lodygensky, G. A., « Imaging of an inflammatory injury in the newborn rat brain with photoacoustic tomography », PLoS One, 8:12 (décembre 2013), e83045, 8 p.
    • Lam, T., Pouliot, P., Avti, P. K., Lesage, F., Kakkar, A., « Superparamagnetic iron oxide based nanoprobes for imaging and theranostics », Advances in Colloid and Interface Science, 199-200 (novembre 2013), 95–113.
    • Lee, J., Wu, W., Lesage, F., Boas, D. A., « Multiple-capillary measurement of RBC speed, flux, and density with optical coherence tomography », Journal of Cerebral Blood Flow & Metabolism 33:11 (novembre 2013), 1707–1710.
    • Guevara Codina, E., Sadekova, N., Girouard, H., Lesage, F., « Optical imaging of resting-state functional connectivity in a novel arterial stiffness model », Biomedical Optics Express, 4:11 (octobre 2013), 2332–2346.
    • Kamrani, E., Lesage, F., Sawan, M., « On-chip integrated photoreceiver for real-time brain imaging », Transactions of Japanese Society for Medical and Biological Engineering, 51:Suppl. (septembre 2013), R–75.
    • Ng, V. W. K., Berti, R., Lesage, F., Kakkar, A., « Gold: a versatile tool for in vivo imaging », Journal of Materials Chemestry B, 2013:1 (août 2013), 9–25.
    • Guevara Codina, E., Pouliot, P., Nguyen, D. K., Lesage, F., « Optical imaging of acute epileptic networks in mice », Journal of Biomedical Optics, 18:7 (juillet 2013), 76021, 8 p.
    • El Helou, J., Bélanger-Nelson, E., Freyburger, M., Dorsaz, S., Curie, T., La Spada, F., Gaudreault, P.-O., Beaumont, É., Pouliot, P., Lesage, F., Frank, M. G., Franken, P., Mongrain, V., « Neuroligin-1 links neuronal activity to sleep-wake regulation », Proceedings of the National Academy of Sciences of the United States of America, 110:24 (juin 2013), 9974–9979.
    • Sadekova, N., Vallerand, D., Guevara Codina, E., Lesage, F., Girouard, H., « Carotid calcification in mice: a new model to study the effects of arterial stiffness on the brain », Journal of the American Heart Association, 2:3 (juin 2013), e000224, 12 p.
    • Sawan, M., Salam, M. T., Le Lan, J., Kassab, A., Gelinas, S., Vannasing, P., Lesage, F., Lassonde, M., Nguyen, D. K., « Wireless recording systems: from noninvasive EEG-NIRS to invasive EEG devices », IEEE Transactions on Biomedical Circuits and Systems, 7:2 (avril 2013), 186–195.
    • Kamrani, E., Lesage, F., Sawan, M., « Efficient premature edge breakdown prevention in SiAPD fabrication using the standard CMOS process », Semiconductor Science and Technology, 28:4 (avril 2013), 045008, 6 p.
    • Nguyen, D. K., Tremblay, J., Pouliot, P., Vannasing, P., Florea, O., Carmant, L., Lepore, F., Sawan, M., Lesage, F., Lassonde, M., « Noninvasive continuous functional near-infrared spectroscopy combined with electroencephalography recording of frontal lobe seizures », Epilepsia, 54:2 (février 2013), 331–340.
    • Laguë-Beauvais, M., Brunet, J., Lesage, F., Bherer, L., « A fNIRS investigation of switching and inhibition during the modified stroop task in younger and older adults », NeuroImage, 64 (janvier 2013), 485–495.
    • Rouleau, L., Berti, R., Ng, V. W. K., Matteau-Pelletier, C., Lam, T., Saboural, P., Kakkar, A., Lesage, F., Rhéaume, É., Tardif, J.-C., « VCAM-1-targeting gold nanoshell probe for photoacoustic imaging of atherosclerotic plaque in mice », Contrast Media & Molecular Imagining, 8:1 (janvier 2013), 27–39.
    • Kamrani, E., Lesage, F., Sawan, M., « Fully on-chip integrated photodetector front-end dedicated to real-time portable optical brain imaging », Optics and Photonics Journal, 2:4 (décembre 2012), 300–313.
    • Dubeau, S., Havlicek, M., Beaumont, É., Ferland, G., Lesage, F., Pouliot, P., « Neurovascular deconvolution of optical signals as a proxy for the true neuronal inputs », Journal of Neuroscience Methods, 210:2 (septembre 2012), 247–258.
    • Gagnon, C., Desjardins-Crépeau, L., Tournier, I., Desjardins, M., Lesage, F., Greenwood, C. E., Bherer, L., « Near-infrared imagining of the effects of glucose ingestion and regulation on prefrontal activation during dual-task execution in healthy fasting older adults », Behavioural Brain Research, 232:1 (juin 2012), 137–147.
    • Gagnon, C., Desjardins-Crépeau, L., Tournier, I., Desjardins, M., Lesage, F., Greenwood, C. E., Bherer, L., « Near-infrared imaging of the effects of glucose ingestion and regulation on prefrontal activation during dual-task execution in healthy fasting older adults », Behavioural Brain Research, 232:1 (juin 2012), 137–147.
    • Kahlaoui, K., Di Sante, G., Barbeau, J., Maheux, M., Lesage, F., Ska, B., Joanette, Y., « Contribution of NIRS to the study of prefrontal cortex for verbal fluency in aging », Brain and Language, 121:2 (mai 2012), 164–173.
    • Scherer, L. C., Fonseca, R. P., Amiri, M., Adrover-Roig, D., Marcotte, K., Giroux, F., Senhadji, M. N., Benali, H., Lesage, F., Ansaldo, A. I., « Syntactic processing in bilinguals: An fNIRS study », Brain and Language, 121:2 (mai 2012), 144–151.
    • Scherer, L. C., Fonseca, R. P., Giroux, F., Senhadji, M. N., Marcotte, K., Tomitch, L. M. B., Benali, H., Lesage, F., Ska, B., Joanette, Y., « Neurofunctional (re)organization underlying narrative discourse processing in aging: Evidence from fNIRS », Brain and Language, 121:2 (mai 2012), 174–784.
    • Bonnery, C., Leclerc, P.-O., Desjardins, M., Hoge, R. D., Bherer, L., Pouliot, P., Lesage, F., « Changes in diffusion path length with old age in diffuse optical tomography », Journal of Biomedical Optics, 17:5 (mai 2012), 056002, 9 p.
    • Pouliot, P., Tremblay, J., Robert, M., Vannasing, P., Lepore, F., Lassonde, M., Sawan, M., Nguyen, D. K., Lesage, F., « Nonlinear hemodynamic responses in human epilepsy: A multimodal analysis with fNIRS-EEG and fMRI-EEG », Journal of Neuroscience Methods, 204:2 (mars 2012), 326–340.
    • Nguyen, D. K., Tremblay, J., Pouliot, P., Vannasing, P., Florea, O., Carmant, L., Lepore, F., Sawan, M., Lesage, F., Lassonde, M., « Non-invasive continuous EEG-fNIRS recording of temporal lobe seizures », Epilepsy Research, 99:1-2 (mars 2012), 112–126.
    • Bolduc, V., Baraghis, E., Duquette, N., Thorin-Trescases, N., Lambert, J., Lesage, F., Thorin, É., « Catechin prevents severe dyslipidemia-associated changes in wall biomechanics of cerebral arteries in $\mathrm{LDLr}^{-/-}:\mathrm{hApoB}^{+/+}$ mice and improves cerebral blood flow », American Journal of Physiology. Heart and Circulatory Physiology, 302:6 (mars 2012), H1330–H1339.
    • Desjardins, M., Pouliot, P., Lesage, F., « Principles and applications of diffuse optical tomography for the brain », Current Medical Imaging Reviews, 8:3 (2012), 157–173.

    Peer-reviewed conference proceedings:

    • Lu, X., Moeini, M., Li, B., Sakadzic, S., Lesage, F., « Voluntary exercise confers protection against age-related deficits in brain oxygenation in awake mice model of Alzheimer’s disease », in Neural Imaging and Sensing 2018, SPIE BIOS (San Francisco, 2018), Q. Luo, J. Ding, éd., Proceedings of SPIE, Vol. 10481, Bellingham, WA, SPIE, 2018, 104811G, 6 p.
    • Delafontaine-Martel, P., Lefebvre, J., Damseh, R., Castonguay, A., Tardif, P.-L., Lesage, F., « Large scale serial two-photon microscopy to investigate local vascular changes in whole rodent brain models of Alzheimer’s disease », in Multiphoton Microscopy in the Biomedical Sciences XVIII, SPIE BIOS (San Francisco, CA, 2018), A. Periasamy, P. T. C. So, K. Köning, X. S. Xie, éd., Proceedings of SPIE, Vol. 10498, Bellingham, WA, SPIE, 2018, 104982O, 6 p.
    • Zhang, C., Tabatabaei Shafiei, M. S., Bélanger, S., Girouard, H., Moeini, M., Lu, X., Lesage, F., « In vivo measurement of astrocytic endfoot $\mathrm{Ca}^{2+}$ and parenchymal vessel responses during 4-AP induced epilepsy using two-photon fluorescence lifetime microscopy », in Multiphoton Microscopy in the Biomedical Sciences XVIII, SPIE BIOS (San Francisco, CA, 2018), A. Periasamy, P. T. C. So, K. Köning, X. S. Xie, éd., Proceedings of SPIE, Vol. 10498, Bellingham, WA, SPIE, 2018, 104980X, 7 p.
    • Lefebvre, J., Castonguay, A., Lesage, F., « Imaging whole mouse brains with a dual resolution serial swept-source optical coherence tomography scanner », in Neural Imaging and Sensing 2018, SPIE BIOS (San Francisco, CA. 2018), Q. Luo, J. Ding, éd., Proceedings of SPIE, Vol. 10481, Bellingham, WA, SPIE, 2018, 104810I, 9 p.
    • Lu, X., Moeini, M., Li, B., Zhang, C., Sakadzic, S., Lesage, F., « 3D brain oxygenation measurements in awake hypertensive mice using two photon phosphorescence lifetime imaging », in Multiphoton Microscopy in the Biomedical Sciences XVIII, SPIE BIOS (San Francisco, CA, 2018), A. Periasamy, P. T. C. So, K. Köning, X. S. Xie, éd., Proceedings of SPIE, Vol. 10498, Bellingham, WA, SPIE, 2018, 104981Y, 6 p.
    • Lu, X., Li, B., Moeini, M., Lesage, F., « Simultaneous two-photon imaging of cerebral oxygenation and capillary blood flow in atherosclerotic mice », in Neural Imaging and Sensing, Neural Imaging and Sensing (San Francisco, CA, 2017), Q. Luo, J. Ding, éd., Proceedings of SPIE, Vol. 10051, Bellingham, WA, SPIE, 2017, 100510O, 6 p.
    • Lefebvre, J., Castonguay, A., Lesage, F., « White matter segmentation by estimating tissue optical attenuation from volumetric OCT massive histology of whole rodent brains », in Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXIV, SPIE BIOS (San Francisco, CA, 2017), T. G. Brown, C. J. Cogswell, T. Wilson, éd., Proceedings of SPIE, Vol. 10070, Bellingham, WA, SPIE, 2017, 1007012, 9 p.
    • Pinto, M., Aubertin, K., Desroches, J., Jermyn, M., Trinh, V., Vladoiu, M., Grosset, A.-A., Lavallee, A. P., Benzyane, I., Faci, N., Richard, M., Duong, L., Haas, C., Badawy, Y., Saad, F., Zorn, K., Lesage, F., Leblond, F., Trudel, D., « Towards live detection of cancerous tissue during radical prostatectomy using a Raman spectroscopy probe », in Optics in the Life Sciences Congress, Bio-Optics: Design and Application 2017 (San Diego, CA, 2017), Optical Society of America, 2017, JS1A.3.
    • Flores-Castro, A., Peng, K., Nguyen, D. K., Lesage, F., Pouliot, P., Rosas-Romero, R., Guevara Codina, E., « Detecting epileptic seizures in advance using optical and electrical recordings », in 2017 International Conference on Electronics, Communications and Computers (CONIELECOMP), 2017 International Conference on Electronics, Communications and Computers (Cholula, 2017), IEEE, 2017, 1–4.
    • Farah, R., Bélanger, S., Jafari, R., Chevrefils, C., Sylvestre, J.-P., Lesage, F., Cheriet, F., « Retinal vessel segmentation from a hyperspectral camera images », in Image Analysis and Recognition, International Conference Image Analysis and Recognition — ICIAR 2017 (Montréal, QC, 2017), F. Karray, A. Campilho, F. Cheriet, éd., Lecture Notes in Computer Science, Vol. 10317, Berlin, Cham, 2017, 559–566.
    • Moeini, M., Tabatabaei Shafiei, M. S., Kakkar, A., Lesage, F., « Capillary substrate of brain tissue oxygenation changes with age », in Biomedical Optics 2016, Optics and the Brain 2016 (Fort Lauderdale. FL, 2016), The Optical Society of America, 2016, BM4D.2.
    • Saha, S., Lesage, F., Sawan, M., « Time-resolved reflectance using short source-detector separation », in 2016 IEEE International Symposium on Circuits and Systems (ISCAS), 2016 IEEE International Symposium on Circuits and Systems (Montréal, QC, 2016), IEEE, 2016, 333-336.
    • Saha, S., Lesage, F., Sawan, M., « High-voltage pulse generator with variable delay for ultrafast gating of single photon detector », in 2016 IEEE 7th Latin American Symposium on Circuits Systems (LASCAS), 2016 IEEE 7th Latin American Symposium on Circuits Systems (Florianopolis, 2016), IEEE, 2016, 131–134.
    • Lesage, F., Castonguay, A., Tardif, P.-L., Lefebvre, J., Li, B., « Investigating the impact of blood pressure increase to the brain using high resolution serial histology and image processing », in Wavelets and Sparsity XVI, Wavelets and Sparsity XVI (San Diego, CA, 2015), M. Papadakis, V. K. Goyal, D. Van De Ville, éd., Proceedings of SPIE, Vol. 9597, Bellingham, WA, SPIE, 2015, 9597M, 8 p.
    • Castonguay, A., Avti, P. K., Moeini, M., Pouliot, P., Tabatabaei Shafiei, M. S., Lesage, F., Bélanger, S., « Investigating the correlation between white matter and microvasculature changes in aging using large scale optical coherence tomography and confocal fluorescence imaging combined with tissue sectioning », in Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XIII, SPIE BIOS (Sa, Francisco, CA, 2015), D. L. Farkas, D. V. Nicolau, R. C. Leif, éd., Proceedings of SPIE, Vol. 9328, Bellingham, WA, SPIE, 2015, 9328M, 6 p.
    • Moeini, M., Tabatabaei Shafiei, M. S., Bélanger, S., Avti, P. K., Castonguay, A., Pouliot, P., Lesage, F., « Effects of anesthesia on the cerebral capillary blood flow in young and old mice », in Multiphoton Microscopy in the Biomedical Sciences XV, SPIE BIOS (San Francisco, 2015), A. Perlasamy, P. T. C. So, K. Köning, éd., Proceedings of SPIE, Vol. 9329, Bellingham, WA, SPIE, 2015, 932929, 6 p.
    • Li, B., Pouliot, P., Lesage, F., « MRI-guided fiber-based fluorescence molecular tomography for preclinical atherosclerosis », in Photonics North 2014, Photonics North 2014 (Montréal, QC, 2014), S. MacLean, D. V. Plant, éd., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 92880R, 6 p.
    • Guevara Codina, E., Berti, R., Londono, I., Xie, N., Bellec, P., Lesage, F., Lodygensky, G. A., « Photoacoustic imaging of an inflammatory lesion model inthe neonatl rat brain  », Photonics North, Steven MacLean, David V. Plant, éd., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 92880Q, 6pp.
    • Guevara Codina, E., Gutiérrez-Hernandez, J. M., Lesage, F., Gonzalez, F. J., Castonguay, A., « Ex-vivo multi-modal microscopy of healthy skin », in Photonics North 2014, Photonics North 2014, S. MacLean, D. V. Plant, éd., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 92880P, 6 p.
    • Gagnon, L., Sakadzic, S., Lesage, F., Musacchia, J. J., Lefebvre, J., Fang, Q., Yucel, M. A., Evans, K., Mandeville, E. T., Cohen-Adad, J., Polimeni, J., Yaseen, M. A., Lo, E. H., Greve, D., Buxton, R. B., Dale, A., Devor, A., Boas, D. A., « Underpinning the microvascular oigin of BOLD-fMRI with two-photon microscopy », Biomedical Optics Express, 2014.
    • Guevara Codina, E., Berti, R., Londono, I., Xie, N., Bellec, P., Lesage, F., Lodygensky, G. A., « Photoacoustic imaging of an inflammatory lesion model in the neonatal rat brain », in Photonics North 2014, Photonics North 2014 (Montréal, QC, 2014), S. MacLean, D. V. Plant, éd., Proceedings of SPIE, Vol. 9288, Bellingham, WA, SPIE, 2014, 9288Q, 6 p.
    • Sakadzic, S., Mandeville, E. T., Gagnon, L., Musacchia, J. J., Yaseen, M. A., Yucel, M. A., Lefebvre, J., Lesage, F., Dale, A., Eikermann-Haerter, K., Ayata, C., Srinivasan, V. J., Lo, E. H., Devor, A., Boas, D. A., « High-resolution optical microscopy imaging of cortical oxygen delivery and consumption », in 2014 Conference on Lasers and Electro-Optics (CLEO) – Laser Science to Photonic Applications, 2014 Conference on Lasers and Electro-Optics (San Jose, 2014), IEEE, 2014, AF2B.3, 3 p.
    • Sabouni, A., Pouliot, P., Shmuel, A., Lesage, F., « BRAIN initiative: Fast and parallel solver for real-time monitoring of the eddy current in the brain for TMS applications », in 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (Chicago, IL, 2014), 2014, 6250–6253.
    • Kamrani, E., Lesage, F., Sawan, M., « Towards on-chip integration of brain imaging photodetecors using standard CMOS process », in Conference proceeding: Annual International Conference od the IEEE Engineering in Medicine and Biology Society, Conference IEEE Engineering in Medicine and Biology Society, IEEE, 2013, 2668–2671.
    • Sabouni, A., Venkateswaran, A., Shmuel, A., Pouliot, P., Lesage, F., « An automated technique to determine the induced current in transcranial magnetic stimulation  », in IEEE Antennas and Propagation Society International Symposium (APSURSI), Antennas and Propagation Society International Symposium, IEEE, 2013, 2050–2051.
    • Kamrani, E., Chaddad, A., Lesage, F., Sawan, M., « Integrated transimpedance amplifier dedicated to low-noise and low-power biomedical applications », in 29th Southern Biomedical Engineering Conference (SBEC), 29th Southern Biomedical Engineering conference, IEEE, 2013, 5–6.
    • Kamrani, E., Lesage, F., Sawan, M., « On-chip single photon counting electronic circuitry dedicated real-time brain imaging applications », in 29th Southern Biomedical Engineering Conference (SBEC), 29th Southern Biomedical Engineering conference, IEEE, 2013, 61–62.
    • Kamrani, E., Lesage, F., Sawan, M., Hamady, M., « Modeling and characterizing optical CMOS sensors for biomedical low-intensity light detection », in 29th Southern Biomedical Engineering Conference (SBEC), 29th Southern Biomedical Engineering conference, IEEE, 2013, 83–84.
    • Lesage, F., Bonnery, C., Pouliot, P., « Diffusion Optical Tomography and Biophysical Modeling of the Aging Brain », in 4th International Conference on Biomedical Engineering in Vietnam, IFMBE Proceedings, Vo Van Toi Nguyen Bao Toan, Truong Quang Dang Khoa, Tran Ha Lien Phuong, éd., Vol. 40, Berlin, Springer, 2013, 250–253.
    • Kamrani, E., Lesage, F., Sawan, M., « Premature edge breakdown prevention techniques in CMOS APD fabrication », in IEEE 10th International New Circuits and Systems Conference (NEWCAS), 10th International New Circuits and Systems Conference (NEWCAS), IEEE, 2012, 345–348.
    • Pouliot, P., Truong, V. T., Zhang, C., Dubeau, S., Lesage, F., « Tight neurovascular coupling in a rat model of quasi-periodic interictal spiking using multispectral optical imaging », in Proceedings of SPIE, Photonics North 2012, Vol. 8412, 2012, 841203, 6pp.
    • Sawan, M., Salam, M. T., Gélinas, J.-S., Le Lan, J., Lesage, F., Nguyen, D. K., « Combined NIRS-EEG remote recording for epilepsy and stroke real-time monitoring », in IEEE International Symposium on circuits and systems (ISCAS), International Symposium on circuits and systems (ISCAS), IEEE, 2012, 13–16.
    • Lesage, F., Dubeau, S., Zhang, C., Baraghis, E., Ferland, G., Gaudreau, P., Pouliot, P., « Intrinsic imaging and Doppler OCT assessment of vascular reactivity with aging under caloric restriction  », Biomedical Optics OSA, Imagig of vascular dynamics invited, 2012.
    • Spinelli, L., Botwicz, M., Zolek, N., Kacprzak, M., Milej, D., Liebert, A., Weigel, U., Durduran, T., Foschum, F., Kienle, A., Baribeau, F., Leclair, S., Bouchard, J.-P., Noiseux, I., Gallant, P., Mermut, O., Pifferi, A., Torricelli, A., Cubeddu, R., Ho, H.-C., Mazurenka, M., Wabnitz, H., Klauenberg, K., Bodnar, O., Elster, C., Bénazech-Lavoué, M., Bérubé-Lauzière, Y., Lesage, F., Di Ninni, P., Martelli, F., Zaccanti, G., « Inter-Laboratory Comparison of Optical Properties Performed on Intralipid and India Ink », Biomedical Optics, 2012.
    • Baraghis, E., Bolduc, V., Gillis, M.-A., Srinivasan, V. J., Thorin, É., Boudoux, C., Lesage, F., « Synthetic reconstruction of dynamic blood flow in cortical arteries using optical coherence tomography for the evalution of vessel compliance », in SPIE Proceedings , CNS Imaging and Stimulation II Vol. 7883, SPIE Digital Library, 2012, 10pp.



    Jean-Marc Lina

    Peer-reviewed journal articles:

    • de la Sablonnière, R., Lina, J.-M., Cárdenas, D., « Rethinking current models in social psychology: A Bayesian framework to understand dramatic social change », British Journal of Social Psychology (XXXX), accepté.
    • Machado, A., Cai, Z., Pellegrino, G., Marcotte, O., Vincent, T., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal positioning of optodes on the scalp for personalized functional near-infrared spectroscopy investigations », Journal of Neuroscience Methods, 309 (novembre 2018), 91–108.
    • Laventure, S., Pinsard, B., Lungu, O., Carrier, J., Fogel, S., Benali, H., Lina, J.-M., Boutin, A., Doyon, J., « Beyond spindles: interactions between sleep spindles and boundary frequencies during cued reactivation of motor memory representations », Sleep, 41:9 (septembre 2018), zsy142, 14 p.
    • Chowdhury, R. A., Pellegrino, G., Aydin, U., Lina, J.-M., Dubeau, F., Kobayashi, E., Grova, C., « Reproducibility of EEG-MEG fusion source analysis of interictal spikes: Relevance in presurgical evaluation of epilepsy », Human Brain Mapping, 39:2 (février 2018), 880–901.
    • Pellegrino, G., Hedrich, T., Chowdhury, R. A., Hall, J. A., Dubeau, F., Lina, J.-M., Kobayashi, E., Grova, C., « Clinical yield of magnetoencephalography distributed source imaging in epilepsy: A comparison with equivalent current dipole method », Human Brain Mapping, 39:1 (janvier 2018), 218–231.
    • Matar, G., Lina, J.-M., Carrier, J., Kaddoum, G., « Unobtrusive sleep monitoring using cardiac, breathing and movements activities: an exhaustive review », IEEE Access, 6 (2018), 45129–45152.
    • Lee, K., Khoo, H. M., Lina, J.-M., Dubeau, F., Gotman, J., Grova, C., « Disruption, emergence and lateralization of brain network hubs in mesial temporal lobe epilepsy », NeuroImage: Clinical, 20 (2018), 71–84.
    • Hedrich, T., Pellegrino, G., Kobayashi, E., Lina, J.-M., Grova, C., « Comparison of the spatial resolution of source imaging techniques in high-density EEG and MEG », NeuroImage, 157 (août 2017), 531–544.
    • Desjardins, M.-È., Carrier, J., Lina, J.-M., Fortin, M., Gosselin, N., Montplaisir, J., Zadra, A., « EEG functional connectivity prior to sleepwalking: Evidence of interplay between sleep and wakefulness », Sleep, 40:4 (avril 2017), zsx024, 8 p.
    • Gauvin, M., Sustar, M., Little, J. M., Brecelj, J., Lina, J.-M., Lachapelle, P., « Quantifying the ON and OFF contributions to the flash ERG with the discrete wavelet transform », Translational Vision Science & Technology, 6:1 (janvier 2017), 3, 11 p.
    • Maheux, M., Bisaillon-Sicotte, É., Tabrizi, S., Armony, J. L., Lina, J.-M., Jolicoeur, P., « Optimal measurements of hemodynamic response latency in fNIRS using the jackknife approach », Psychophysiology, 54:1 (janvier 2017), 62–73.
    • Nadon, V., Bockstael, A., Botteldooren, D., Lina, J.-M., Voix, J., « Design considerations for robust noise rejection in otoacoustic emissions measured in-field using adaptive filtering », Acta Acustica united with Acustica, 103:2 (2017), 299–310.
    • Chowdhury, R. A., Merlet, I., Birot, G., Kobayashi, E., Biraben, A., Wendling, F., Lina, J.-M., Albera, L., Grova, C., Nica, A., « Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data », NeuroImage, 143 (décembre 2016), 175–195.
    • Roehri, N., Lina, J.-M., Mosher, J. C., Bartolomei, F., Bénar, C.-G., « Time-frequency strategies for increasing high-frequency oscillation detectability in intracerebral EEG », IEEE Transactions on Biomedical Engineering, 63:12 (décembre 2016), 2595–2606.
    • Chowdhury, R. A., Merlet, I., Birot, G., Kobayashi, E., Biraben, A., Wendling, F., Lina, J.-M., Albera, L., Grova, C., Nica, A., « Complex patterns of spatially extended generators of epileptic activity: Comparison of source localization methods cMEM and 4-ExSo-MUSIC on high resolution EEG and MEG data », NeuroImage, 143 (décembre 2016), 175–195.
    • Pellegrino, G., Hedrich, T., Chowdhury, R. A., Hall, J. A., Lina, J.-M., Dubeau, F., Kobayashi, E., Grova, C., « Source localization of the seizure onset zone from ictal EEG/MEG data », Human Brain Mapping, 37:7 (juillet 2016), 2528–2546.
    • Lee, K., Lina, J.-M., Gotman, J., Grova, C., « SPARK: Sparsity-based analysis of reliable $k$-hubness and overlapping network structure in brain functional connectivity », NeuroImage, 134 (juillet 2016), 434–449.
    • Gauvin, M., Chakor, H., Koenekoop, R. K., Little, J. M., Lina, J.-M., Lachapelle, P., « Erratum to: Witnessing the first sign of retinitis pigmentosa onset in the allegedly normal eye of a case of unilateral RP: a 30-year follow-up », Documenta Ophthalmologica, 132:3 (juin 2016), 231.
    • Gauvin, M., Chakor, H., Koenekoop, R. K., Little, J. M., Lina, J.-M., Lachapelle, P., « Witnessing the first sign of retinitis pigmentosa onset in the allegedly normal eye of a case of unilateral RP: a 30-year follow-up », Documenta Ophthalmologica, 132:3 (juin 2016), 213–229.
    • Lafontaine, M.-P., Lacourse, K., Lina, J.-M., McIntosh, A. R., Gosselin, F., Théoret, H., Lippé, S., « Brain signal complexity rises with repetition suppression in visual learning », Neuroscience, 326 (juin 2016), 1–9.
    • Grova, C., Aiguabella, M., Zelmann, R., Lina, J.-M., Hall, J. A., Kobayashi, E., « Intracranial EEG potentials estimated from MEG sources: A new approach to correlate MEG and iEEG data in epilepsy », Human Brain Mapping, 37:5 (mai 2016), 1661–1683.
    • von Ellenrieder, N., Pellegrino, G., Hedrich, T., Gotman, J., Lina, J.-M., Grova, C., Kobayashi, E., « Detection and magnetic source imaging of fast oscillations (40–160 Hz) recorded with magnetoencephalography in focal epilepsy patients », Brain Topography, 29:2 (mars 2016), 218–231.
    • Gadhoumi, K., Lina, J.-M., Mormann, F., Gotman, J., « Seizure prediction for therapeutic devices: A review », Journal of Neuroscience Methods, 260 (février 2016), 270–282.
    • Chowdhury, R. A., Hedrich, T., Dubeau, F., Lina, J.-M., Grova, C., Kobayashi, E., Heers, M., Hall, J. A., « Localization accuracy of distributed inverse solutions for electric and magnetic source imaging of interictal epileptic discharges in patients with focal epilepsy », Brain Topography, 29:1 (janvier 2016), 162–181.
    • Amiri, M., Lina, J.-M., Pizzo, F., Gotman, J., « High Frequency Oscillations and spikes: Separating real HFOs from false oscillations », Clinical Neurophysiology, 127:1 (janvier 2016), 187–196.
    • Heers, M., Chowdhury, R. A., Hedrich, T., Dubeau, F., Hall, J. A., Lina, J.-M., Grova, C., Kobayashi, E., « Localization accuracy of distributed inverse solutions for electric and magnetic source imaging of interictal epileptic discharges in patients with focal epilepsy », Brain Topography, 29:1 (janvier 2016), 162–181.
    • Gauvin, M., Dorfman, A. L., Trang, N., Gauthier, M., Little, J. M., Lina, J.-M., Lachapelle, P., « Assessing the contribution of the oscillatory potentials to the genesis of the photopic ERG with the discrete wavelet transform », BioMed Research International, 2016 (2016), 2790194, 12 p.
    • Gauvin, M., Little, J. M., Lina, J.-M., Lachapelle, P., « Functional decomposition of the human ERG based on the discrete wavelet transform », Journal of Vision, 15:16 (décembre 2015), 14, 22 p.
    • Chowdhury, R. A., Zerouali, Y., Hedrich, T., Heers, M., Kobayashi, E., Lina, J.-M., Grova, C., « MEG-EEG information fusion and electromagnetic source imaging: from theory to clinical application in epilepsy », Brain Topography, 28:6 (novembre 2015), 785–812.
    • Rosinvil, T., Lafortune, M., Sekerovic, Z., Bouchard, M., Dubé, J., Latulipe-Loiselle, A., Lina, J.-M., Carrier, J., Martin, N., « Age-related changes in sleep spindles characteristics during daytime recovery following a 25-hour sleep deprivation », Frontiers in Human Neuroscience, 9 (juin 2015), 323, 7 p.
    • Dubé, J., Lafortune, M., Bedetti, C., Bouchard, M., Gagnon, J.-F., Doyon, J., Evans, A. C., Lina, J.-M., Carrier, J., « Cortical thinning explains changes in sleep slow waves during adulthood », The Journal of Neuroscience, 35:20 (mai 2015), 7795–7807.
    • Gadhoumi, K., Gotman, J., Lina, J.-M., « Scale invariance properties of intracerebral eeg improve seizure prediction in mesial temporal lobe epilepsy », PLoS One, 10:4 (avril 2015), e0121182, 23 p.
    • Nadon, V., Bockstael, A., Botteldooren, D., Lina, J.-M., Voix, J., « Individual monitoring of hearing status: Development and validation of advanced techniques to measure otoacoustic emissions in suboptimal test conditions », Applied Acoustics, 89 (mars 2015), 78–87.
    • O’Reilly, C., Godbout, J., Carrier, J., Lina, J.-M., « Combining time-frequency and spatial information for the detection of sleep spindles », Frontiers in Human Neuroscience, 9 (février 2015), 9, 14 p.
    • Zerouali, Y., Lina, J.-M., Sekerovic, Z., Godbout, J., Dubé, J., Jolicoeur, P., Carrier, J., « A time-frequency analysisof the dynamics of cortical networks of sleep spindles from MEG-EEG recordings », Frontiers in Neuroscience, 8 (octobre 2014), 310, 13 p.
    • Zelmann, R., Lina, J.-M., Schulze-Bonhage, A., Gotman, J., Jacobs, J., « Scalp EEG is not a blur: It can see high frequency oscillations although their genetators are small », Brain Topography, 27:5 (septembre 2014), 683–704.
    • Lina, J.-M., Chowdhury, R. A., Lemay, É., Kobayashi, E., Grova, C., « Wavelet-based localization of oscillatory sources from magnetoencephalography data », IEEE Transactions on Biomedical Engineering, 61:8 (août 2014), 2350–2364.
    • Gauvin, M., Lina, J.-M., Lachapelle, P., « Advance in ERG analysis: From peak time and amplitude to frequency, power, and energy », BioMed Research International, 2014 (juillet 2014), 246096,11 p.
    • Machado, A., Marcotte, O., Lina, J.-M., Kobayashi, E., Grova, C., « Optimal optode montage on electroencephalography/functional near-infrared spectroscopy caps dedicated to study epileptic discharges », Journal of Biomedical Optics, 19:2 (février 2014), 026010, 16 p.
    • Gadhoumi, K., Lina, J.-M., Gotman, J., « Seizure prediction in patients with mesial temporal lobe epilepsy using EEG measures of state similarity », Clinical Neurophysiology, 124:9 (septembre 2013), 1745–1754.
    • Zerouali, Y., Lina, J.-M., Jemel, B., « Optimal eye-gaze fixation position for face-related neural responses », PLoS One, 8:6 (juin 2013), e60128, 10 p.
    • Nadon, V., Bockstael, A., Keppler, H., Botteldooren, D., Lina, J.-M., Voix, J., « Use of passive hearing protectors and adaptive noise reduction for field recording of otoacoustic emissions in industrial noise », Proceedings of Meetings on Acoustics, 19:1 (juin 2013), 40019, 10 p.
    • Nadon, V., Bockstael, A., Keppler, H., Botteldooren, D., Lina, J.-M., Voix, J., « Use of passive hearing protectors and adaptive noise reduction for field recording of otoacoustic emissions in industrial noise », The Journal of the Acoustic Society of America, 133:5 (mai 2013), 3274.
    • Zerouali, Y., Herry, C. L., Jemel, B., Lina, J.-M., « Localization of synchronous cortical neural sources », IEEE Transactions on Biomedical Engineering, 60:3 (mars 2013), 770–780.
    • Chowdhury, R. A., Lina, J.-M., Kobayashi, E., Grova, C., « MEG source localization of spatially extended generators of epileptic activity: comparing entropic and hierarchical bayesian approaches », PLoS One, 8:2 (2013), e55969, 19 p.
    • Gadhoumi, K., Lina, J.-M., Gotman, J., « Discriminating preictal and interictal states in patients with temporal lobe epilepsy using wavelet analysis of intracerebral EEG », Clinical Neurophysiology, 123:10 (octobre 2012), 1906–1916.
    • Worrell, G. A., Jerbi, K., Kobayashi, K., Lina, J.-M., Zelmann, R., Le Van Quyen, M., « Recording and analysis techniques for high-frequency oscillations », Progress in Neurobiology, 98:3 (septembre 2012), 265–278.
    • Lopes, R., Lina, J.-M., Fahoum, F., Gotman, J., « Detection of epileptic activity in fMRI without recording the EEG », NeuroImage, 60:3 (mars 2012), 1867–1879.

    Peer-reviewed conference proceedings:

    • Deslauriers-Gauthier, S., Lina, J.-M., Butler, R., Bernier, P.-M., Whittingstall, K., Deriche, R., Descoteaux, M., « Inference and visualization of information flow in the visual pathway using dMRI and EEG », in Medical Image Computing and Computer Assisted Intervention — MICCAI 2017, 20th International Conference on Medical Image Computing and Computer Assisted Intervention (Québec, QC, 2017), M. Descoteaux, L. Maier-Hein, A. Franz, P. Jannin, D. L. Collins, S. Duchesne, éd., Lecture Notes in Computer Science, Vol. 10433, Cham, Springer, 2017, 505–512.
    • Matar, G., Lina, J.-M., Carrier, J., Riley, A., Kaddoum, G., « Internet of Things in sleep monitoring: An application for posture recognition using supervised learning », in 2016 IEEE 18th International Conference on e-Health Networking, Applications and Services (Healthcom), 2016 IEEE 18th International Conference on e-Health Networking, Applications and Service (Munich, 2016), IEEE, 2016, 6 p.
    • Franiatte, S., Ramos, O., Joyal, M.-A., Fortin, S., April, A., Lina, J.-M., Dawalibi, F. P., « Advancements in the treatment of nonlinear devices in the frequency domain », in Users Group Meeting Conference Proceedings (Boulder, CO, 2016), 2016.
    • Zerouali, Y., Dubé, J., Jolicoeur, P., Carrier, J., Lina, J.-M., « Localisation de l’’activité synchrone pendant les fuseaux de sommeil enregistrés en MEG–EEG », in XXVe colloque GRETSI (GRETSI 2015), XXVe colloque GRETSI (Lyon, 2015), 2015, 396, ? p.
    • Belaoucha, B., Lina, J.-M., Clerc, M., Papadopoulo, T., « MEM-diffusion MRI framework to solve MEEG inverse problem », in 2015 23rd European Signal Processing Conference (EUSIPCO), 2015 23rd European Signal Processing Conference (Nice, 2015), IEEE, 2015, 1875–1879.



    Fahima Nekka

    Peer-reviewed journal articles:

    • Wu, X., Nekka, F., Li, J., « Steady-state volume of distribution of two-compartment models with simultaneous linear and saturated elimination », Journal of Pharmacokinetics and Pharmacodynamics, 43:4 (août 2016), 447–459.
    • Craig, M., González-Sales, M., Li, J., Nekka, F., « Approaching pharmacometrics as a paleontologist would: Recovering the links between drugs and the body through reconstruction », CPT: Pharmacometrics & Systems Pharmacology, 5:3 (mai 2016), 158–160.
    • Craig, M., Humphries, A. R., Nekka, F., Bélair, J., Li, J., Mackey, M. C., « Neutrophil dynamics during concurrent chemotherapy and G-CSF administration: Mathematical modelling guides dose optimisation to minimise neutropenia », Journal of Theoretical Biology, 385 (novembre 2015), 77–89.
    • Sarem, S., Nekka, F., Ahmed, I. S., Litalien, C., Li, J., « Impact of sampling time deviations on the prediction of the area under the curve using regression limited sampling strategies », Biopharmaceutics & Drug Disposition, 36:7 (octobre 2015), 417–428.
    • Sarem, S., Nekka, F., Barrière, O., Lapeyraque, A.-L., Duval, M., Teira, P., Bittencourt, H., Haddad, E., Théorêt, Y., Litalien, C., « Limited sampling strategies for estimating intravenous and oral cyclosporine area under the curve in pediatric hematopoietic stem cell transplantation  », Therapeutic Drug Monitoring, 37:2 (avril 2015), 198–205.
    • Wu, X., Li, J., Nekka, F., « Closed form solutions and dominant elimination pathways of simultaneous first-order and Michaelis–Menten kinetics », Journal of Pharmacokinetics and Pharmacodynamics, 42:2 (avril 2015), 151–161.
    • Bonnefois, G., Barrière, O., Nekka, F., Li, J., « A computational strategy for dose adaptation at the population and group levels », IOSR Journal of Pharmacy and Biological Sciences, 10:3 (2015), 52–63.
    • Sarem, S., Li, J., Barrière, O., Litalien, C., Théorêt, Y., Lapeyraque, A.-L., Nekka, F., « Bayesian approach for the estimation of cyclosporine area under the curve using limited sampling strategies in pediatric hematopoietic stem cell transplantation », Theoretical Biology & Medical Modelling, 11 (septembre 2014), 39, 22 p.
    • Barrière, O., Li, J., Nekka, F., « Compliance spectrum as a drug fingerprint of drug intake and drug disposition », Journal of Pharmacokinetics and Pharmacodynamics, 40:1 (février 2013), 41–52.
    • Li, J., Nekka, F., « A rational quantitative approach to determine the best dosing regimen for a target therapeutic effect: a unified formalism for antibiotic evaluation », Journal of Theoretical Biology, 319 (février 2013), 88–95.

    Peer-reviewed conference proceedings:

    • Li, J., Nekka, F., « A spatial and nondegenerative autocorrelation function to reveal the inner similarity structure of irregular sets », in Emerging Applications of Wavelet Methods, 7th International Congress on Industrial and Applied Mathematics-Thematic Minisymposia, Siddiqi, A. H., éd., AIP Conference Proceedings, Melvile, NY, Amer. Inst. Phys., 2012, 39–51.